JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
KCNJ2_chr17_70164532_70185044	0/0	t0035	4105	2	2	0	0	0	0	copy fasta	KCNJ2	chr17	70164532	70185044
KCNJ2_chr17_70164532_70185044	0/0	t0036	4093	2	0	0	2	0	0	copy fasta	KCNJ2	chr17	70164532	70185044
KCNJ2_chr17_70164532_70185044	0/0	t0037	4105	2	0	0	2	0	0	copy fasta	KCNJ2	chr17	70164532	70185044
KCNJ2_chr17_70164532_70185044	0/0	t0038	4106	2	2	0	0	0	0	copy fasta	KCNJ2	chr17	70164532	70185044
KCNJ2_chr17_70164532_70185044	0/0	t0039	4119	2	2	0	0	0	0	copy fasta	KCNJ2	chr17	70164532	70185044
KCNJ2_chr17_70164532_70185044	0/0	t0040	4106	1	0	0	1	0	0	copy fasta	KCNJ2	chr17	70164532	70185044
KCNJ2_chr17_70164532_70185044	0/0	t0041	4108	1	0	1	0	0	0	copy fasta	KCNJ2	chr17	70164532	70185044
KCNJ2_chr17_70164532_70185044	0/0	t0042	4110	1	1	0	0	0	0	copy fasta	KCNJ2	chr17	70164532	70185044
KCNJ2_chr17_70164532_70185044	0/0	t0043	4107	1	0	1	0	0	0	copy fasta	KCNJ2	chr17	70164532	70185044
KCNJ2_chr17_70164532_70185044	0/0	t0044	4105	1	0	1	0	0	0	copy fasta	KCNJ2	chr17	70164532	70185044
KCNJ2_chr17_70164532_70185044	0/0	t0045	4108	1	0	0	1	0	0	copy fasta	KCNJ2	chr17	70164532	70185044
KCNJ2_chr17_70164532_70185044	0/0	t0046	4109	1	0	0	1	0	0	copy fasta	KCNJ2	chr17	70164532	70185044
KCNJ2_chr17_70164532_70185044	0/0	t0047	4108	1	0	0	1	0	0	copy fasta	KCNJ2	chr17	70164532	70185044
KCNJ2_chr17_70164532_70185044	0/0	t0048	4091	1	0	0	1	0	0	copy fasta	KCNJ2	chr17	70164532	70185044
KCNJ2_chr17_70164532_70185044	0/0	t0049	4108	1	1	0	0	0	0	copy fasta	KCNJ2	chr17	70164532	70185044
KCNJ2_chr17_70164532_70185044	0/0	t0050	4110	1	0	0	1	0	0	copy fasta	KCNJ2	chr17	70164532	70185044
KCNJ2_chr17_70164532_70185044	0/0	t0051	4109	1	0	0	1	0	0	copy fasta	KCNJ2	chr17	70164532	70185044
KCNJ2_chr17_70164532_70185044	0/0	t0052	4110	1	0	0	1	0	0	copy fasta	KCNJ2	chr17	70164532	70185044
KCNJ2_chr17_70164532_70185044	0/0	t0053	4111	1	0	0	1	0	0	copy fasta	KCNJ2	chr17	70164532	70185044
KCNJ2_chr17_70164532_70185044	0/0	t0054	4103	1	0	0	1	0	0	copy fasta	KCNJ2	chr17	70164532	70185044
KCNJ2_chr17_70164532_70185044	0/0	t0055	4102	1	0	0	1	0	0	copy fasta	KCNJ2	chr17	70164532	70185044
KCNJ2_chr17_70164532_70185044	0/0	t0056	4103	1	1	0	0	0	0	copy fasta	KCNJ2	chr17	70164532	70185044
KCNJ2_chr17_70164532_70185044	0/0	t0057	4093	1	0	0	0	0	1	copy fasta	KCNJ2	chr17	70164532	70185044
KCNJ2_chr17_70164532_70185044	0/0	t0058	4109	1	0	0	1	0	0	copy fasta	KCNJ2	chr17	70164532	70185044
KCNJ2_chr17_70164532_70185044	0/0	t0059	4110	1	0	0	0	0	1	copy fasta	KCNJ2	chr17	70164532	70185044
KCNJ2_chr17_70164532_70185044	0/0	t0060	4104	1	1	0	0	0	0	copy fasta	KCNJ2	chr17	70164532	70185044
KCNJ2_chr17_70164532_70185044	0/0	t0061	4092	1	0	0	1	0	0	copy fasta	KCNJ2	chr17	70164532	70185044
KCNJ2_chr17_70164532_70185044	0/0	t0062	4098	1	1	0	0	0	0	copy fasta	KCNJ2	chr17	70164532	70185044
KCNJ2_chr17_70164532_70185044	0/0	t0063	4099	1	1	0	0	0	0	copy fasta	KCNJ2	chr17	70164532	70185044
KCNJ2_chr17_70164532_70185044	0/0	t0064	4109	1	0	0	0	1	0	copy fasta	KCNJ2	chr17	70164532	70185044
KCNJ2_chr17_70164532_70185044	0/0	t0065	4110	1	0	0	1	0	0	copy fasta	KCNJ2	chr17	70164532	70185044
KCNJ2_chr17_70164532_70185044	0/0	t0066	4106	1	0	0	0	0	1	copy fasta	KCNJ2	chr17	70164532	70185044
KCNJ2_chr17_70164532_70185044	0/0	t0067	4107	1	0	0	0	0	1	copy fasta	KCNJ2	chr17	70164532	70185044
KCNJ2_chr17_70164532_70185044	0/0	t0068	4106	1	0	0	0	1	0	copy fasta	KCNJ2	chr17	70164532	70185044
KCNJ2_chr17_70164532_70185044	0/0	t0069	4107	1	0	0	0	1	0	copy fasta	KCNJ2	chr17	70164532	70185044
KCNJ2_chr17_70164532_70185044	0/0	t0070	4104	1	0	0	1	0	0	copy fasta	KCNJ2	chr17	70164532	70185044
KCNJ2_chr17_70164532_70185044	0/0	t0071	4106	1	0	0	1	0	0	copy fasta	KCNJ2	chr17	70164532	70185044
KCNJ2_chr17_70164532_70185044	0/0	t0072	4109	1	0	1	0	0	0	copy fasta	KCNJ2	chr17	70164532	70185044
KCNJ2_chr17_70164532_70185044	0/0	t0073	4108	1	1	0	0	0	0	copy fasta	KCNJ2	chr17	70164532	70185044
KCNJ2_chr17_70164532_70185044	0/0	t0074	4108	1	0	0	1	0	0	copy fasta	KCNJ2	chr17	70164532	70185044
KCNJ2_chr17_70164532_70185044	0/0	t0075	4110	1	0	0	1	0	0	copy fasta	KCNJ2	chr17	70164532	70185044
KCNJ2_chr17_70164532_70185044	0/0	t0076	4108	1	0	1	0	0	0	copy fasta	KCNJ2	chr17	70164532	70185044
KCNJ2_chr17_70164532_70185044	0/0	t0077	4117	1	1	0	0	0	0	copy fasta	KCNJ2	chr17	70164532	70185044
KCNJ2_chr17_70164532_70185044	0/0	t0078	4118	1	1	0	0	0	0	copy fasta	KCNJ2	chr17	70164532	70185044
KCNJ2_chr17_70164532_70185044	0/0	t0079	4120	1	1	0	0	0	0	copy fasta	KCNJ2	chr17	70164532	70185044
KCNJ2_chr17_70164532_70185044	0/0	t0080	4122	1	1	0	0	0	0	copy fasta	KCNJ2	chr17	70164532	70185044
KCNJ3_chr2_154693695_154863354	0/0	t0001	3103	68	1	13	41	2	11	copy fasta	KCNJ3	chr2	154693695	154863354
KCNJ3_chr2_154693695_154863354	0/0	t0002	3112	29	4	6	15	0	4	copy fasta	KCNJ3	chr2	154693695	154863354
KCNJ3_chr2_154693695_154863354	0/0	t0003	3111	24	9	10	3	1	1	copy fasta	KCNJ3	chr2	154693695	154863354
KCNJ3_chr2_154693695_154863354	1/0	t0004	3123	20	14	1	1	0	3	copy fasta	KCNJ3	chr2	154693695	154863354