JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
KCNJ4_chr22_38421327_38460199	0/0	t0001	727	210	45	37	98	5	25	copy fasta	KCNJ4	chr22	38421327	38460199
KCNJ4_chr22_38421327_38460199	0/1	t0002	728	58	12	21	10	7	7	copy fasta	KCNJ4	chr22	38421327	38460199
KCNJ4_chr22_38421327_38460199	0/0	t0003	727	56	1	5	36	3	11	copy fasta	KCNJ4	chr22	38421327	38460199
KCNJ4_chr22_38421327_38460199	0/0	t0004	727	20	15	2	0	1	2	copy fasta	KCNJ4	chr22	38421327	38460199
KCNJ4_chr22_38421327_38460199	0/0	t0005	727	14	7	3	0	0	4	copy fasta	KCNJ4	chr22	38421327	38460199
KCNJ4_chr22_38421327_38460199	0/0	t0006	727	4	1	2	0	0	1	copy fasta	KCNJ4	chr22	38421327	38460199
KCNJ4_chr22_38421327_38460199	0/0	t0007	727	4	4	0	0	0	0	copy fasta	KCNJ4	chr22	38421327	38460199
KCNJ4_chr22_38421327_38460199	0/0	t0008	728	3	0	0	3	0	0	copy fasta	KCNJ4	chr22	38421327	38460199
KCNJ4_chr22_38421327_38460199	0/0	t0009	727	3	3	0	0	0	0	copy fasta	KCNJ4	chr22	38421327	38460199
KCNJ4_chr22_38421327_38460199	0/0	t0010	727	3	3	0	0	0	0	copy fasta	KCNJ4	chr22	38421327	38460199
KCNJ4_chr22_38421327_38460199	0/0	t0011	727	1	1	0	0	0	0	copy fasta	KCNJ4	chr22	38421327	38460199
KCNJ4_chr22_38421327_38460199	0/0	t0012	727	1	0	0	1	0	0	copy fasta	KCNJ4	chr22	38421327	38460199
KCNJ4_chr22_38421327_38460199	0/0	t0013	727	1	0	0	1	0	0	copy fasta	KCNJ4	chr22	38421327	38460199
KCNJ4_chr22_38421327_38460199	1/0	t0014	728	1	0	0	0	0	0	copy fasta	KCNJ4	chr22	38421327	38460199
KCNJ4_chr22_38421327_38460199	0/0	t0015	727	1	0	0	1	0	0	copy fasta	KCNJ4	chr22	38421327	38460199
KCNJ5_chr11_128886356_128926163	0/0	t0001	4808	9	0	3	6	0	0	copy fasta	KCNJ5	chr11	128886356	128926163
KCNJ5_chr11_128886356_128926163	0/0	t0002	4811	9	0	0	9	0	0	copy fasta	KCNJ5	chr11	128886356	128926163
KCNJ5_chr11_128886356_128926163	0/0	t0003	4793	9	2	2	0	3	2	copy fasta	KCNJ5	chr11	128886356	128926163
KCNJ5_chr11_128886356_128926163	0/0	t0004	4808	8	0	3	4	1	0	copy fasta	KCNJ5	chr11	128886356	128926163
KCNJ5_chr11_128886356_128926163	0/0	t0005	4797	7	0	3	3	1	0	copy fasta	KCNJ5	chr11	128886356	128926163
KCNJ5_chr11_128886356_128926163	0/0	t0006	4806	7	0	0	7	0	0	copy fasta	KCNJ5	chr11	128886356	128926163
KCNJ5_chr11_128886356_128926163	0/0	t0007	4806	6	0	3	3	0	0	copy fasta	KCNJ5	chr11	128886356	128926163
KCNJ5_chr11_128886356_128926163	0/0	t0008	4798	5	0	0	5	0	0	copy fasta	KCNJ5	chr11	128886356	128926163
KCNJ5_chr11_128886356_128926163	0/0	t0009	4797	5	0	4	1	0	0	copy fasta	KCNJ5	chr11	128886356	128926163
KCNJ5_chr11_128886356_128926163	0/0	t0010	4799	5	0	1	3	0	1	copy fasta	KCNJ5	chr11	128886356	128926163
KCNJ5_chr11_128886356_128926163	0/0	t0011	4789	5	5	0	0	0	0	copy fasta	KCNJ5	chr11	128886356	128926163
KCNJ5_chr11_128886356_128926163	0/0	t0012	4799	4	0	3	1	0	0	copy fasta	KCNJ5	chr11	128886356	128926163
KCNJ5_chr11_128886356_128926163	0/0	t0013	4803	4	0	0	4	0	0	copy fasta	KCNJ5	chr11	128886356	128926163
KCNJ5_chr11_128886356_128926163	0/0	t0014	4799	4	0	3	0	1	0	copy fasta	KCNJ5	chr11	128886356	128926163
KCNJ5_chr11_128886356_128926163	1/0	t0015	4809	4	0	0	1	1	1	copy fasta	KCNJ5	chr11	128886356	128926163
KCNJ5_chr11_128886356_128926163	0/0	t0016	4812	4	0	2	2	0	0	copy fasta	KCNJ5	chr11	128886356	128926163
KCNJ5_chr11_128886356_128926163	0/0	t0017	4810	4	0	1	2	0	1	copy fasta	KCNJ5	chr11	128886356	128926163
KCNJ5_chr11_128886356_128926163	0/0	t0018	4809	4	1	2	1	0	0	copy fasta	KCNJ5	chr11	128886356	128926163
KCNJ5_chr11_128886356_128926163	0/0	t0019	4805	4	4	0	0	0	0	copy fasta	KCNJ5	chr11	128886356	128926163
KCNJ5_chr11_128886356_128926163	0/0	t0020	4817	3	1	0	2	0	0	copy fasta	KCNJ5	chr11	128886356	128926163
KCNJ5_chr11_128886356_128926163	0/0	t0021	4815	3	0	0	3	0	0	copy fasta	KCNJ5	chr11	128886356	128926163
KCNJ5_chr11_128886356_128926163	0/0	t0022	4814	3	1	0	1	0	1	copy fasta	KCNJ5	chr11	128886356	128926163
KCNJ5_chr11_128886356_128926163	0/0	t0023	4815	3	0	0	1	0	2	copy fasta	KCNJ5	chr11	128886356	128926163
KCNJ5_chr11_128886356_128926163	0/0	t0024	4807	3	0	0	3	0	0	copy fasta	KCNJ5	chr11	128886356	128926163
KCNJ5_chr11_128886356_128926163	0/0	t0025	4806	3	0	2	0	1	0	copy fasta	KCNJ5	chr11	128886356	128926163
KCNJ5_chr11_128886356_128926163	0/0	t0026	4789	3	2	1	0	0	0	copy fasta	KCNJ5	chr11	128886356	128926163
KCNJ5_chr11_128886356_128926163	0/0	t0027	4815	3	0	0	3	0	0	copy fasta	KCNJ5	chr11	128886356	128926163
KCNJ5_chr11_128886356_128926163	0/0	t0028	4813	3	0	0	3	0	0	copy fasta	KCNJ5	chr11	128886356	128926163
KCNJ5_chr11_128886356_128926163	0/0	t0029	4793	3	0	2	1	0	0	copy fasta	KCNJ5	chr11	128886356	128926163
KCNJ5_chr11_128886356_128926163	0/0	t0030	4819	3	0	2	1	0	0	copy fasta	KCNJ5	chr11	128886356	128926163
KCNJ5_chr11_128886356_128926163	0/0	t0031	4797	3	3	0	0	0	0	copy fasta	KCNJ5	chr11	128886356	128926163
KCNJ5_chr11_128886356_128926163	0/0	t0032	4794	3	0	1	0	0	2	copy fasta	KCNJ5	chr11	128886356	128926163
KCNJ5_chr11_128886356_128926163	0/0	t0033	4805	3	3	0	0	0	0	copy fasta	KCNJ5	chr11	128886356	128926163
KCNJ5_chr11_128886356_128926163	0/0	t0034	4804	3	3	0	0	0	0	copy fasta	KCNJ5	chr11	128886356	128926163
KCNJ5_chr11_128886356_128926163	0/0	t0035	4808	2	0	0	0	0	2	copy fasta	KCNJ5	chr11	128886356	128926163