JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
KCNJ5_chr11_128886356_128926163	0/0	t0136	4798	1	0	0	1	0	0	copy fasta	KCNJ5	chr11	128886356	128926163
KCNJ5_chr11_128886356_128926163	0/0	t0137	4809	1	0	0	1	0	0	copy fasta	KCNJ5	chr11	128886356	128926163
KCNJ5_chr11_128886356_128926163	0/0	t0138	4802	1	0	0	1	0	0	copy fasta	KCNJ5	chr11	128886356	128926163
KCNJ5_chr11_128886356_128926163	0/0	t0139	4797	1	0	1	0	0	0	copy fasta	KCNJ5	chr11	128886356	128926163
KCNJ5_chr11_128886356_128926163	0/0	t0140	4807	1	0	0	1	0	0	copy fasta	KCNJ5	chr11	128886356	128926163
KCNJ5_chr11_128886356_128926163	0/0	t0141	4795	1	0	0	0	0	1	copy fasta	KCNJ5	chr11	128886356	128926163
KCNJ5_chr11_128886356_128926163	0/0	t0142	4817	1	0	0	1	0	0	copy fasta	KCNJ5	chr11	128886356	128926163
KCNJ5_chr11_128886356_128926163	0/0	t0143	4807	1	0	0	1	0	0	copy fasta	KCNJ5	chr11	128886356	128926163
KCNJ5_chr11_128886356_128926163	0/0	t0144	4821	1	1	0	0	0	0	copy fasta	KCNJ5	chr11	128886356	128926163
KCNJ5_chr11_128886356_128926163	0/0	t0145	4817	1	0	0	1	0	0	copy fasta	KCNJ5	chr11	128886356	128926163
KCNJ5_chr11_128886356_128926163	0/0	t0146	4821	1	0	0	1	0	0	copy fasta	KCNJ5	chr11	128886356	128926163
KCNJ5_chr11_128886356_128926163	0/0	t0147	4825	1	0	0	0	0	1	copy fasta	KCNJ5	chr11	128886356	128926163
KCNJ5_chr11_128886356_128926163	0/0	t0148	4824	1	1	0	0	0	0	copy fasta	KCNJ5	chr11	128886356	128926163
KCNJ5_chr11_128886356_128926163	0/0	t0149	4813	1	0	0	0	0	1	copy fasta	KCNJ5	chr11	128886356	128926163
KCNJ5_chr11_128886356_128926163	0/0	t0150	4813	1	0	0	1	0	0	copy fasta	KCNJ5	chr11	128886356	128926163
KCNJ5_chr11_128886356_128926163	0/0	t0151	4822	1	1	0	0	0	0	copy fasta	KCNJ5	chr11	128886356	128926163
KCNJ5_chr11_128886356_128926163	0/0	t0152	4816	1	0	0	0	0	1	copy fasta	KCNJ5	chr11	128886356	128926163
KCNJ5_chr11_128886356_128926163	0/0	t0153	4812	1	0	0	1	0	0	copy fasta	KCNJ5	chr11	128886356	128926163
KCNJ5_chr11_128886356_128926163	0/0	t0154	4811	1	0	0	1	0	0	copy fasta	KCNJ5	chr11	128886356	128926163
KCNJ5_chr11_128886356_128926163	0/0	t0155	4810	1	0	0	1	0	0	copy fasta	KCNJ5	chr11	128886356	128926163
KCNJ5_chr11_128886356_128926163	0/0	t0156	4819	1	1	0	0	0	0	copy fasta	KCNJ5	chr11	128886356	128926163
KCNJ5_chr11_128886356_128926163	0/0	t0157	4811	1	0	0	1	0	0	copy fasta	KCNJ5	chr11	128886356	128926163
KCNJ5_chr11_128886356_128926163	0/0	t0158	4807	1	0	0	1	0	0	copy fasta	KCNJ5	chr11	128886356	128926163
KCNJ5_chr11_128886356_128926163	0/0	t0159	4806	1	0	1	0	0	0	copy fasta	KCNJ5	chr11	128886356	128926163
KCNJ5_chr11_128886356_128926163	0/0	t0160	4806	1	0	1	0	0	0	copy fasta	KCNJ5	chr11	128886356	128926163
KCNJ5_chr11_128886356_128926163	0/0	t0161	4808	1	0	0	1	0	0	copy fasta	KCNJ5	chr11	128886356	128926163
KCNJ5_chr11_128886356_128926163	0/0	t0162	4815	1	0	1	0	0	0	copy fasta	KCNJ5	chr11	128886356	128926163
KCNJ5_chr11_128886356_128926163	0/0	t0163	4810	1	1	0	0	0	0	copy fasta	KCNJ5	chr11	128886356	128926163
KCNJ5_chr11_128886356_128926163	0/0	t0164	4803	1	0	0	1	0	0	copy fasta	KCNJ5	chr11	128886356	128926163
KCNJ5_chr11_128886356_128926163	0/0	t0165	4799	1	0	0	1	0	0	copy fasta	KCNJ5	chr11	128886356	128926163
KCNJ5_chr11_128886356_128926163	0/0	t0166	4797	1	0	1	0	0	0	copy fasta	KCNJ5	chr11	128886356	128926163
KCNJ5_chr11_128886356_128926163	0/0	t0167	4795	1	1	0	0	0	0	copy fasta	KCNJ5	chr11	128886356	128926163
KCNJ5_chr11_128886356_128926163	0/0	t0168	4794	1	0	0	1	0	0	copy fasta	KCNJ5	chr11	128886356	128926163
KCNJ5_chr11_128886356_128926163	0/0	t0169	4793	1	0	1	0	0	0	copy fasta	KCNJ5	chr11	128886356	128926163
KCNJ5_chr11_128886356_128926163	0/0	t0170	4792	1	0	1	0	0	0	copy fasta	KCNJ5	chr11	128886356	128926163
KCNJ5_chr11_128886356_128926163	0/0	t0171	4800	1	1	0	0	0	0	copy fasta	KCNJ5	chr11	128886356	128926163
KCNJ5_chr11_128886356_128926163	0/0	t0172	4789	1	1	0	0	0	0	copy fasta	KCNJ5	chr11	128886356	128926163
KCNJ5_chr11_128886356_128926163	0/0	t0173	4777	1	0	1	0	0	0	copy fasta	KCNJ5	chr11	128886356	128926163
KCNJ5_chr11_128886356_128926163	0/0	t0174	4819	1	1	0	0	0	0	copy fasta	KCNJ5	chr11	128886356	128926163
KCNJ5_chr11_128886356_128926163	0/0	t0175	4817	1	0	0	1	0	0	copy fasta	KCNJ5	chr11	128886356	128926163
KCNJ5_chr11_128886356_128926163	0/0	t0176	4819	1	0	0	0	0	1	copy fasta	KCNJ5	chr11	128886356	128926163
KCNJ5_chr11_128886356_128926163	0/0	t0177	4816	1	0	0	0	0	1	copy fasta	KCNJ5	chr11	128886356	128926163
KCNJ5_chr11_128886356_128926163	0/0	t0178	4816	1	0	0	1	0	0	copy fasta	KCNJ5	chr11	128886356	128926163
KCNJ5_chr11_128886356_128926163	0/0	t0179	4817	1	0	0	1	0	0	copy fasta	KCNJ5	chr11	128886356	128926163
KCNJ5_chr11_128886356_128926163	0/0	t0180	4815	1	0	0	1	0	0	copy fasta	KCNJ5	chr11	128886356	128926163
KCNJ5_chr11_128886356_128926163	0/0	t0181	4810	1	0	0	0	1	0	copy fasta	KCNJ5	chr11	128886356	128926163
KCNJ5_chr11_128886356_128926163	0/0	t0182	4809	1	0	0	1	0	0	copy fasta	KCNJ5	chr11	128886356	128926163
KCNJ5_chr11_128886356_128926163	0/0	t0183	4808	1	0	0	0	0	1	copy fasta	KCNJ5	chr11	128886356	128926163
KCNJ5_chr11_128886356_128926163	0/0	t0184	4819	1	0	0	0	0	1	copy fasta	KCNJ5	chr11	128886356	128926163
KCNJ5_chr11_128886356_128926163	0/0	t0185	4823	1	1	0	0	0	0	copy fasta	KCNJ5	chr11	128886356	128926163