JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
KCNJ5_chr11_128886356_128926163	0/0	t0236	4811	1	1	0	0	0	0	copy fasta	KCNJ5	chr11	128886356	128926163
KCNJ5_chr11_128886356_128926163	0/0	t0237	4813	1	1	0	0	0	0	copy fasta	KCNJ5	chr11	128886356	128926163
KCNJ5_chr11_128886356_128926163	0/0	t0238	4818	1	0	0	1	0	0	copy fasta	KCNJ5	chr11	128886356	128926163
KCNJ5_chr11_128886356_128926163	0/0	t0239	4801	1	1	0	0	0	0	copy fasta	KCNJ5	chr11	128886356	128926163
KCNJ5_chr11_128886356_128926163	0/0	t0240	4799	1	0	0	0	0	1	copy fasta	KCNJ5	chr11	128886356	128926163
KCNJ5_chr11_128886356_128926163	0/0	t0241	4796	1	1	0	0	0	0	copy fasta	KCNJ5	chr11	128886356	128926163
KCNJ5_chr11_128886356_128926163	0/0	t0242	4794	1	1	0	0	0	0	copy fasta	KCNJ5	chr11	128886356	128926163
KCNJ5_chr11_128886356_128926163	0/0	t0243	4805	1	1	0	0	0	0	copy fasta	KCNJ5	chr11	128886356	128926163
KCNJ5_chr11_128886356_128926163	0/0	t0244	4792	1	0	0	0	0	1	copy fasta	KCNJ5	chr11	128886356	128926163
KCNJ5_chr11_128886356_128926163	0/0	t0245	4801	1	0	1	0	0	0	copy fasta	KCNJ5	chr11	128886356	128926163
KCNJ5_chr11_128886356_128926163	0/0	t0246	4795	1	1	0	0	0	0	copy fasta	KCNJ5	chr11	128886356	128926163
KCNJ5_chr11_128886356_128926163	0/0	t0247	4799	1	0	0	1	0	0	copy fasta	KCNJ5	chr11	128886356	128926163
KCNJ5_chr11_128886356_128926163	0/0	t0248	4799	1	0	0	1	0	0	copy fasta	KCNJ5	chr11	128886356	128926163
KCNJ5_chr11_128886356_128926163	0/0	t0249	4794	1	0	0	1	0	0	copy fasta	KCNJ5	chr11	128886356	128926163
KCNJ5_chr11_128886356_128926163	0/0	t0250	4797	1	0	1	0	0	0	copy fasta	KCNJ5	chr11	128886356	128926163
KCNJ5_chr11_128886356_128926163	0/0	t0251	4786	1	0	0	1	0	0	copy fasta	KCNJ5	chr11	128886356	128926163
KCNJ5_chr11_128886356_128926163	0/0	t0252	4773	1	1	0	0	0	0	copy fasta	KCNJ5	chr11	128886356	128926163
KCNJ5_chr11_128886356_128926163	0/0	t0253	4818	1	0	0	1	0	0	copy fasta	KCNJ5	chr11	128886356	128926163
KCNJ5_chr11_128886356_128926163	0/0	t0254	4814	1	0	0	0	1	0	copy fasta	KCNJ5	chr11	128886356	128926163
KCNJ5_chr11_128886356_128926163	0/0	t0255	4813	1	0	0	1	0	0	copy fasta	KCNJ5	chr11	128886356	128926163
KCNJ5_chr11_128886356_128926163	0/0	t0256	4806	1	0	0	1	0	0	copy fasta	KCNJ5	chr11	128886356	128926163
KCNJ5_chr11_128886356_128926163	0/0	t0257	4807	1	0	0	1	0	0	copy fasta	KCNJ5	chr11	128886356	128926163
KCNJ5_chr11_128886356_128926163	0/0	t0258	4817	1	0	1	0	0	0	copy fasta	KCNJ5	chr11	128886356	128926163
KCNJ5_chr11_128886356_128926163	0/0	t0259	4813	1	0	1	0	0	0	copy fasta	KCNJ5	chr11	128886356	128926163
KCNJ5_chr11_128886356_128926163	0/0	t0260	4798	1	0	0	0	0	1	copy fasta	KCNJ5	chr11	128886356	128926163
KCNJ5_chr11_128886356_128926163	0/0	t0261	4799	1	1	0	0	0	0	copy fasta	KCNJ5	chr11	128886356	128926163
KCNJ5_chr11_128886356_128926163	0/0	t0262	4796	1	0	1	0	0	0	copy fasta	KCNJ5	chr11	128886356	128926163
KCNJ5_chr11_128886356_128926163	0/0	t0263	4807	1	1	0	0	0	0	copy fasta	KCNJ5	chr11	128886356	128926163
KCNJ5_chr11_128886356_128926163	0/0	t0264	4794	1	0	0	0	0	1	copy fasta	KCNJ5	chr11	128886356	128926163
KCNJ5_chr11_128886356_128926163	0/0	t0265	4805	1	1	0	0	0	0	copy fasta	KCNJ5	chr11	128886356	128926163
KCNJ5_chr11_128886356_128926163	0/0	t0266	4790	1	0	0	0	1	0	copy fasta	KCNJ5	chr11	128886356	128926163
KCNJ5_chr11_128886356_128926163	0/0	t0267	4799	1	0	1	0	0	0	copy fasta	KCNJ5	chr11	128886356	128926163
KCNJ5_chr11_128886356_128926163	0/0	t0268	4806	1	1	0	0	0	0	copy fasta	KCNJ5	chr11	128886356	128926163
KCNJ5_chr11_128886356_128926163	0/0	t0269	4822	1	0	0	1	0	0	copy fasta	KCNJ5	chr11	128886356	128926163
KCNJ5_chr11_128886356_128926163	0/0	t0270	4798	1	1	0	0	0	0	copy fasta	KCNJ5	chr11	128886356	128926163
KCNJ5_chr11_128886356_128926163	0/0	t0271	4814	1	0	0	0	0	1	copy fasta	KCNJ5	chr11	128886356	128926163
KCNJ5_chr11_128886356_128926163	0/0	t0272	4809	1	0	0	1	0	0	copy fasta	KCNJ5	chr11	128886356	128926163
KCNJ5_chr11_128886356_128926163	0/0	t0273	4804	1	0	0	1	0	0	copy fasta	KCNJ5	chr11	128886356	128926163
KCNJ5_chr11_128886356_128926163	0/0	t0274	4798	1	0	0	1	0	0	copy fasta	KCNJ5	chr11	128886356	128926163
KCNJ5_chr11_128886356_128926163	0/0	t0275	4812	1	0	0	0	0	1	copy fasta	KCNJ5	chr11	128886356	128926163
KCNJ5_chr11_128886356_128926163	0/0	t0276	4808	1	0	0	1	0	0	copy fasta	KCNJ5	chr11	128886356	128926163
KCNJ5_chr11_128886356_128926163	0/0	t0277	4829	1	0	0	1	0	0	copy fasta	KCNJ5	chr11	128886356	128926163
KCNJ5_chr11_128886356_128926163	0/0	t0278	4832	1	0	0	1	0	0	copy fasta	KCNJ5	chr11	128886356	128926163
KCNJ5_chr11_128886356_128926163	0/0	t0279	4798	1	1	0	0	0	0	copy fasta	KCNJ5	chr11	128886356	128926163
KCNJ5_chr11_128886356_128926163	0/0	t0280	4795	1	1	0	0	0	0	copy fasta	KCNJ5	chr11	128886356	128926163
KCNJ5_chr11_128886356_128926163	0/0	t0281	4811	1	1	0	0	0	0	copy fasta	KCNJ5	chr11	128886356	128926163
KCNJ5_chr11_128886356_128926163	0/0	t0282	4804	1	1	0	0	0	0	copy fasta	KCNJ5	chr11	128886356	128926163
KCNJ5_chr11_128886356_128926163	0/0	t0283	4797	1	1	0	0	0	0	copy fasta	KCNJ5	chr11	128886356	128926163
KCNJ5_chr11_128886356_128926163	0/0	t0284	4782	1	0	0	0	0	1	copy fasta	KCNJ5	chr11	128886356	128926163
KCNJ5_chr11_128886356_128926163	0/0	t0285	4789	1	1	0	0	0	0	copy fasta	KCNJ5	chr11	128886356	128926163