JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
KCNJ6_chr21_37602373_37921457	0/0	t0045	18478	1	1	0	0	0	0	copy fasta	KCNJ6	chr21	37602373	37921457
KCNJ6_chr21_37602373_37921457	0/0	t0046	18476	1	0	0	1	0	0	copy fasta	KCNJ6	chr21	37602373	37921457
KCNJ6_chr21_37602373_37921457	0/0	t0047	18495	1	0	0	1	0	0	copy fasta	KCNJ6	chr21	37602373	37921457
KCNJ6_chr21_37602373_37921457	0/0	t0048	18512	1	0	1	0	0	0	copy fasta	KCNJ6	chr21	37602373	37921457
KCNJ6_chr21_37602373_37921457	0/0	t0049	18493	1	0	0	1	0	0	copy fasta	KCNJ6	chr21	37602373	37921457
KCNJ6_chr21_37602373_37921457	0/0	t0050	18469	1	1	0	0	0	0	copy fasta	KCNJ6	chr21	37602373	37921457
KCNJ6_chr21_37602373_37921457	0/0	t0051	18470	1	0	0	1	0	0	copy fasta	KCNJ6	chr21	37602373	37921457
KCNJ6_chr21_37602373_37921457	0/0	t0052	18472	1	0	0	1	0	0	copy fasta	KCNJ6	chr21	37602373	37921457
KCNJ6_chr21_37602373_37921457	0/0	t0053	18476	1	0	0	1	0	0	copy fasta	KCNJ6	chr21	37602373	37921457
KCNJ6_chr21_37602373_37921457	0/0	t0054	18487	1	0	0	1	0	0	copy fasta	KCNJ6	chr21	37602373	37921457
KCNJ6_chr21_37602373_37921457	0/0	t0055	18482	1	0	0	1	0	0	copy fasta	KCNJ6	chr21	37602373	37921457
KCNJ6_chr21_37602373_37921457	0/0	t0056	18519	1	0	0	0	1	0	copy fasta	KCNJ6	chr21	37602373	37921457
KCNJ6_chr21_37602373_37921457	0/0	t0057	18452	1	0	0	0	1	0	copy fasta	KCNJ6	chr21	37602373	37921457
KCNJ6_chr21_37602373_37921457	0/0	t0058	18492	1	0	0	1	0	0	copy fasta	KCNJ6	chr21	37602373	37921457
KCNJ6_chr21_37602373_37921457	0/0	t0059	18475	1	0	0	1	0	0	copy fasta	KCNJ6	chr21	37602373	37921457
KCNJ6_chr21_37602373_37921457	0/0	t0060	18460	1	0	1	0	0	0	copy fasta	KCNJ6	chr21	37602373	37921457
KCNJ6_chr21_37602373_37921457	0/0	t0061	18458	1	0	1	0	0	0	copy fasta	KCNJ6	chr21	37602373	37921457
KCNJ6_chr21_37602373_37921457	0/0	t0062	18444	1	1	0	0	0	0	copy fasta	KCNJ6	chr21	37602373	37921457
KCNJ6_chr21_37602373_37921457	0/0	t0063	18434	1	0	1	0	0	0	copy fasta	KCNJ6	chr21	37602373	37921457
KCNJ6_chr21_37602373_37921457	0/0	t0064	18428	1	1	0	0	0	0	copy fasta	KCNJ6	chr21	37602373	37921457
KCNJ6_chr21_37602373_37921457	0/0	t0065	18404	1	1	0	0	0	0	copy fasta	KCNJ6	chr21	37602373	37921457
KCNJ6_chr21_37602373_37921457	0/0	t0066	18454	1	0	0	0	0	1	copy fasta	KCNJ6	chr21	37602373	37921457
KCNJ6_chr21_37602373_37921457	0/0	t0067	18476	1	0	1	0	0	0	copy fasta	KCNJ6	chr21	37602373	37921457
KCNJ6_chr21_37602373_37921457	0/0	t0068	18492	1	0	0	1	0	0	copy fasta	KCNJ6	chr21	37602373	37921457
KCNJ6_chr21_37602373_37921457	0/0	t0069	18512	1	0	0	1	0	0	copy fasta	KCNJ6	chr21	37602373	37921457
KCNJ6_chr21_37602373_37921457	0/0	t0070	18502	1	0	0	1	0	0	copy fasta	KCNJ6	chr21	37602373	37921457
KCNJ6_chr21_37602373_37921457	0/0	t0071	18483	1	1	0	0	0	0	copy fasta	KCNJ6	chr21	37602373	37921457
KCNJ6_chr21_37602373_37921457	0/0	t0072	18486	1	1	0	0	0	0	copy fasta	KCNJ6	chr21	37602373	37921457
KCNJ6_chr21_37602373_37921457	0/0	t0073	18491	1	0	0	1	0	0	copy fasta	KCNJ6	chr21	37602373	37921457
KCNJ6_chr21_37602373_37921457	0/0	t0074	18478	1	0	0	1	0	0	copy fasta	KCNJ6	chr21	37602373	37921457
KCNJ6_chr21_37602373_37921457	0/0	t0075	18468	1	0	0	1	0	0	copy fasta	KCNJ6	chr21	37602373	37921457
KCNJ6_chr21_37602373_37921457	0/0	t0076	18480	1	0	0	1	0	0	copy fasta	KCNJ6	chr21	37602373	37921457
KCNJ6_chr21_37602373_37921457	0/0	t0077	18474	1	0	0	1	0	0	copy fasta	KCNJ6	chr21	37602373	37921457
KCNJ6_chr21_37602373_37921457	0/0	t0078	18465	1	0	0	0	0	1	copy fasta	KCNJ6	chr21	37602373	37921457
KCNJ6_chr21_37602373_37921457	0/0	t0079	18480	1	0	0	1	0	0	copy fasta	KCNJ6	chr21	37602373	37921457
KCNJ6_chr21_37602373_37921457	0/0	t0080	18468	1	0	0	0	0	1	copy fasta	KCNJ6	chr21	37602373	37921457
KCNJ6_chr21_37602373_37921457	0/0	t0081	18476	1	1	0	0	0	0	copy fasta	KCNJ6	chr21	37602373	37921457
KCNJ6_chr21_37602373_37921457	0/0	t0082	18464	1	0	1	0	0	0	copy fasta	KCNJ6	chr21	37602373	37921457
KCNJ6_chr21_37602373_37921457	0/0	t0083	18454	1	0	1	0	0	0	copy fasta	KCNJ6	chr21	37602373	37921457
KCNJ6_chr21_37602373_37921457	0/0	t0084	18441	1	1	0	0	0	0	copy fasta	KCNJ6	chr21	37602373	37921457
KCNJ6_chr21_37602373_37921457	0/0	t0085	18484	1	1	0	0	0	0	copy fasta	KCNJ6	chr21	37602373	37921457
KCNJ6_chr21_37602373_37921457	0/0	t0086	18508	1	1	0	0	0	0	copy fasta	KCNJ6	chr21	37602373	37921457
KCNJ6_chr21_37602373_37921457	0/0	t0087	18486	1	0	1	0	0	0	copy fasta	KCNJ6	chr21	37602373	37921457
KCNJ6_chr21_37602373_37921457	0/0	t0088	18488	1	0	1	0	0	0	copy fasta	KCNJ6	chr21	37602373	37921457
KCNJ6_chr21_37602373_37921457	0/0	t0089	18478	1	1	0	0	0	0	copy fasta	KCNJ6	chr21	37602373	37921457
KCNJ6_chr21_37602373_37921457	0/0	t0090	18478	1	1	0	0	0	0	copy fasta	KCNJ6	chr21	37602373	37921457
KCNJ6_chr21_37602373_37921457	0/0	t0091	18474	1	1	0	0	0	0	copy fasta	KCNJ6	chr21	37602373	37921457
KCNJ6_chr21_37602373_37921457	0/0	t0092	18389	1	0	0	1	0	0	copy fasta	KCNJ6	chr21	37602373	37921457
KCNJ6_chr21_37602373_37921457	0/0	t0093	18447	1	0	0	1	0	0	copy fasta	KCNJ6	chr21	37602373	37921457
KCNJ6_chr21_37602373_37921457	0/0	t0094	18507	1	0	0	1	0	0	copy fasta	KCNJ6	chr21	37602373	37921457