Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ANTXR1_chr2_69008179_69254327	0/0	t0017	4158	1	1	0	0	0	0	copy fasta	ANTXR1	chr2	69008179	69254327
ANTXR1_chr2_69008179_69254327	0/0	t0018	4164	1	1	0	0	0	0	copy fasta	ANTXR1	chr2	69008179	69254327
ANTXR1_chr2_69008179_69254327	0/0	t0019	4164	1	1	0	0	0	0	copy fasta	ANTXR1	chr2	69008179	69254327
ANTXR1_chr2_69008179_69254327	0/0	t0020	4164	1	1	0	0	0	0	copy fasta	ANTXR1	chr2	69008179	69254327
ANTXR1_chr2_69008179_69254327	0/0	t0021	4164	1	1	0	0	0	0	copy fasta	ANTXR1	chr2	69008179	69254327
ANTXR1_chr2_69008179_69254327	0/0	t0022	4163	1	1	0	0	0	0	copy fasta	ANTXR1	chr2	69008179	69254327
ANTXR1_chr2_69008179_69254327	0/0	t0023	4163	1	1	0	0	0	0	copy fasta	ANTXR1	chr2	69008179	69254327
ANTXR1_chr2_69008179_69254327	0/0	t0024	4164	1	0	1	0	0	0	copy fasta	ANTXR1	chr2	69008179	69254327
ANTXR1_chr2_69008179_69254327	0/0	t0025	4163	1	1	0	0	0	0	copy fasta	ANTXR1	chr2	69008179	69254327
ANTXR1_chr2_69008179_69254327	0/0	t0026	4163	1	1	0	0	0	0	copy fasta	ANTXR1	chr2	69008179	69254327
ANTXR1_chr2_69008179_69254327	0/0	t0027	4164	1	0	0	1	0	0	copy fasta	ANTXR1	chr2	69008179	69254327
ANTXR1_chr2_69008179_69254327	0/0	t0028	4162	1	0	1	0	0	0	copy fasta	ANTXR1	chr2	69008179	69254327
ANTXR1_chr2_69008179_69254327	0/0	t0029	4164	1	0	1	0	0	0	copy fasta	ANTXR1	chr2	69008179	69254327
ANTXR1_chr2_69008179_69254327	0/0	t0030	4164	1	0	0	0	1	0	copy fasta	ANTXR1	chr2	69008179	69254327
ANTXR1_chr2_69008179_69254327	0/0	t0031	4164	1	1	0	0	0	0	copy fasta	ANTXR1	chr2	69008179	69254327
ANTXR1_chr2_69008179_69254327	0/0	t0032	4158	1	1	0	0	0	0	copy fasta	ANTXR1	chr2	69008179	69254327
ANTXR1_chr2_69008179_69254327	0/0	t0033	4163	1	1	0	0	0	0	copy fasta	ANTXR1	chr2	69008179	69254327
ANTXR1_chr2_69008179_69254327	0/0	t0034	4163	1	0	0	1	0	0	copy fasta	ANTXR1	chr2	69008179	69254327
ANTXR2_chr4_79896146_80078229	0/0	t0001	6954	25	1	10	10	0	4	copy fasta	ANTXR2	chr4	79896146	80078229
ANTXR2_chr4_79896146_80078229	0/0	t0002	6950	21	1	1	16	0	3	copy fasta	ANTXR2	chr4	79896146	80078229
ANTXR2_chr4_79896146_80078229	0/0	t0003	6950	20	2	1	14	0	3	copy fasta	ANTXR2	chr4	79896146	80078229
ANTXR2_chr4_79896146_80078229	0/1	t0004	6953	19	8	8	0	2	0	copy fasta	ANTXR2	chr4	79896146	80078229
ANTXR2_chr4_79896146_80078229	0/0	t0005	6952	16	11	0	3	0	2	copy fasta	ANTXR2	chr4	79896146	80078229
ANTXR2_chr4_79896146_80078229	0/0	t0006	6948	16	0	6	10	0	0	copy fasta	ANTXR2	chr4	79896146	80078229
ANTXR2_chr4_79896146_80078229	0/0	t0007	6952	10	0	5	5	0	0	copy fasta	ANTXR2	chr4	79896146	80078229
ANTXR2_chr4_79896146_80078229	0/0	t0008	6952	8	3	3	2	0	0	copy fasta	ANTXR2	chr4	79896146	80078229
ANTXR2_chr4_79896146_80078229	0/0	t0009	6954	6	0	0	3	1	2	copy fasta	ANTXR2	chr4	79896146	80078229
ANTXR2_chr4_79896146_80078229	0/0	t0010	6950	5	0	1	0	0	4	copy fasta	ANTXR2	chr4	79896146	80078229
ANTXR2_chr4_79896146_80078229	0/0	t0011	6952	5	2	0	2	0	1	copy fasta	ANTXR2	chr4	79896146	80078229
ANTXR2_chr4_79896146_80078229	1/0	t0012	6953	5	4	0	0	0	0	copy fasta	ANTXR2	chr4	79896146	80078229
ANTXR2_chr4_79896146_80078229	0/0	t0013	6952	5	2	1	2	0	0	copy fasta	ANTXR2	chr4	79896146	80078229
ANTXR2_chr4_79896146_80078229	0/0	t0014	6954	4	0	1	0	2	1	copy fasta	ANTXR2	chr4	79896146	80078229
ANTXR2_chr4_79896146_80078229	0/0	t0015	6953	4	0	0	4	0	0	copy fasta	ANTXR2	chr4	79896146	80078229
ANTXR2_chr4_79896146_80078229	0/0	t0016	6955	4	0	0	4	0	0	copy fasta	ANTXR2	chr4	79896146	80078229
ANTXR2_chr4_79896146_80078229	0/0	t0017	6950	4	0	0	3	0	1	copy fasta	ANTXR2	chr4	79896146	80078229
ANTXR2_chr4_79896146_80078229	0/0	t0018	6954	3	0	1	0	0	2	copy fasta	ANTXR2	chr4	79896146	80078229
ANTXR2_chr4_79896146_80078229	0/0	t0019	6953	3	1	0	0	1	1	copy fasta	ANTXR2	chr4	79896146	80078229
ANTXR2_chr4_79896146_80078229	0/0	t0020	6952	3	1	0	1	0	1	copy fasta	ANTXR2	chr4	79896146	80078229
ANTXR2_chr4_79896146_80078229	0/0	t0021	6953	3	0	1	0	1	1	copy fasta	ANTXR2	chr4	79896146	80078229
ANTXR2_chr4_79896146_80078229	0/0	t0022	6949	3	0	0	3	0	0	copy fasta	ANTXR2	chr4	79896146	80078229
ANTXR2_chr4_79896146_80078229	0/0	t0023	6950	3	1	1	0	0	1	copy fasta	ANTXR2	chr4	79896146	80078229
ANTXR2_chr4_79896146_80078229	0/0	t0024	6953	3	2	0	1	0	0	copy fasta	ANTXR2	chr4	79896146	80078229
ANTXR2_chr4_79896146_80078229	0/0	t0025	6953	3	3	0	0	0	0	copy fasta	ANTXR2	chr4	79896146	80078229
ANTXR2_chr4_79896146_80078229	0/0	t0026	6952	2	2	0	0	0	0	copy fasta	ANTXR2	chr4	79896146	80078229
ANTXR2_chr4_79896146_80078229	0/0	t0027	6952	2	0	2	0	0	0	copy fasta	ANTXR2	chr4	79896146	80078229
ANTXR2_chr4_79896146_80078229	0/0	t0028	6949	2	2	0	0	0	0	copy fasta	ANTXR2	chr4	79896146	80078229
ANTXR2_chr4_79896146_80078229	0/0	t0029	6953	2	2	0	0	0	0	copy fasta	ANTXR2	chr4	79896146	80078229
ANTXR2_chr4_79896146_80078229	0/0	t0030	6952	2	0	1	1	0	0	copy fasta	ANTXR2	chr4	79896146	80078229
ANTXR2_chr4_79896146_80078229	0/0	t0031	6953	2	2	0	0	0	0	copy fasta	ANTXR2	chr4	79896146	80078229
ANTXR2_chr4_79896146_80078229	0/0	t0032	6953	2	2	0	0	0	0	copy fasta	ANTXR2	chr4	79896146	80078229