JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
KCNJ6_chr21_37602373_37921457	0/0	t0095	18502	1	1	0	0	0	0	copy fasta	KCNJ6	chr21	37602373	37921457
KCNJ6_chr21_37602373_37921457	0/0	t0096	18430	1	1	0	0	0	0	copy fasta	KCNJ6	chr21	37602373	37921457
KCNJ6_chr21_37602373_37921457	0/0	t0097	18496	1	1	0	0	0	0	copy fasta	KCNJ6	chr21	37602373	37921457
KCNJ6_chr21_37602373_37921457	0/0	t0098	18504	1	0	0	1	0	0	copy fasta	KCNJ6	chr21	37602373	37921457
KCNJ6_chr21_37602373_37921457	0/0	t0099	18488	1	0	0	0	0	1	copy fasta	KCNJ6	chr21	37602373	37921457
KCNJ6_chr21_37602373_37921457	0/0	t0100	18499	1	0	0	1	0	0	copy fasta	KCNJ6	chr21	37602373	37921457
KCNJ6_chr21_37602373_37921457	0/0	t0101	18377	1	1	0	0	0	0	copy fasta	KCNJ6	chr21	37602373	37921457
KCNJ6_chr21_37602373_37921457	0/0	t0102	18370	1	1	0	0	0	0	copy fasta	KCNJ6	chr21	37602373	37921457
KCNJ6_chr21_37602373_37921457	0/0	t0103	18372	1	1	0	0	0	0	copy fasta	KCNJ6	chr21	37602373	37921457
KCNJ6_chr21_37602373_37921457	0/0	t0104	18369	1	1	0	0	0	0	copy fasta	KCNJ6	chr21	37602373	37921457
KCNJ6_chr21_37602373_37921457	0/0	t0105	18474	1	0	1	0	0	0	copy fasta	KCNJ6	chr21	37602373	37921457
KCNJ6_chr21_37602373_37921457	0/0	t0106	18484	1	0	1	0	0	0	copy fasta	KCNJ6	chr21	37602373	37921457
KCNJ6_chr21_37602373_37921457	0/0	t0107	18478	1	0	0	0	0	1	copy fasta	KCNJ6	chr21	37602373	37921457
KCNJ6_chr21_37602373_37921457	0/0	t0108	18476	1	0	1	0	0	0	copy fasta	KCNJ6	chr21	37602373	37921457
KCNJ6_chr21_37602373_37921457	0/0	t0109	18470	1	0	0	1	0	0	copy fasta	KCNJ6	chr21	37602373	37921457
KCNJ6_chr21_37602373_37921457	0/0	t0110	18417	1	0	0	1	0	0	copy fasta	KCNJ6	chr21	37602373	37921457
KCNJ6_chr21_37602373_37921457	0/0	t0111	18396	1	0	1	0	0	0	copy fasta	KCNJ6	chr21	37602373	37921457
KCNJ6_chr21_37602373_37921457	0/0	t0112	18393	1	0	1	0	0	0	copy fasta	KCNJ6	chr21	37602373	37921457
KCNJ6_chr21_37602373_37921457	0/0	t0113	18391	1	0	0	0	1	0	copy fasta	KCNJ6	chr21	37602373	37921457
KCNJ6_chr21_37602373_37921457	0/0	t0114	18387	1	0	0	1	0	0	copy fasta	KCNJ6	chr21	37602373	37921457
KCNJ6_chr21_37602373_37921457	0/0	t0115	18405	1	0	0	1	0	0	copy fasta	KCNJ6	chr21	37602373	37921457
KCNJ6_chr21_37602373_37921457	0/0	t0116	18383	1	0	1	0	0	0	copy fasta	KCNJ6	chr21	37602373	37921457
KCNJ6_chr21_37602373_37921457	0/0	t0117	18395	1	0	0	1	0	0	copy fasta	KCNJ6	chr21	37602373	37921457
KCNJ6_chr21_37602373_37921457	0/0	t0118	18383	1	0	0	1	0	0	copy fasta	KCNJ6	chr21	37602373	37921457
KCNJ6_chr21_37602373_37921457	0/0	t0119	18413	1	1	0	0	0	0	copy fasta	KCNJ6	chr21	37602373	37921457
KCNJ6_chr21_37602373_37921457	0/0	t0120	18409	1	0	0	1	0	0	copy fasta	KCNJ6	chr21	37602373	37921457
KCNJ6_chr21_37602373_37921457	0/0	t0121	18409	1	0	0	1	0	0	copy fasta	KCNJ6	chr21	37602373	37921457
KCNJ6_chr21_37602373_37921457	0/0	t0122	18385	1	0	0	1	0	0	copy fasta	KCNJ6	chr21	37602373	37921457
KCNJ6_chr21_37602373_37921457	0/0	t0123	18415	1	0	0	1	0	0	copy fasta	KCNJ6	chr21	37602373	37921457
KCNJ6_chr21_37602373_37921457	0/0	t0124	18408	1	0	0	1	0	0	copy fasta	KCNJ6	chr21	37602373	37921457
KCNJ6_chr21_37602373_37921457	0/0	t0125	18418	1	0	0	1	0	0	copy fasta	KCNJ6	chr21	37602373	37921457
KCNJ6_chr21_37602373_37921457	0/0	t0126	18395	1	0	0	1	0	0	copy fasta	KCNJ6	chr21	37602373	37921457
KCNJ6_chr21_37602373_37921457	0/0	t0127	18419	1	0	0	1	0	0	copy fasta	KCNJ6	chr21	37602373	37921457
KCNJ6_chr21_37602373_37921457	0/0	t0128	18401	1	0	1	0	0	0	copy fasta	KCNJ6	chr21	37602373	37921457
KCNJ6_chr21_37602373_37921457	0/0	t0129	18414	1	0	0	1	0	0	copy fasta	KCNJ6	chr21	37602373	37921457
KCNJ6_chr21_37602373_37921457	0/0	t0130	18405	1	0	0	1	0	0	copy fasta	KCNJ6	chr21	37602373	37921457
KCNJ6_chr21_37602373_37921457	0/0	t0131	18407	1	0	0	0	0	1	copy fasta	KCNJ6	chr21	37602373	37921457
KCNJ6_chr21_37602373_37921457	0/0	t0132	18421	1	0	0	1	0	0	copy fasta	KCNJ6	chr21	37602373	37921457
KCNJ6_chr21_37602373_37921457	0/0	t0133	18437	1	0	0	1	0	0	copy fasta	KCNJ6	chr21	37602373	37921457
KCNJ6_chr21_37602373_37921457	0/0	t0134	18421	1	0	0	0	0	1	copy fasta	KCNJ6	chr21	37602373	37921457
KCNJ6_chr21_37602373_37921457	0/0	t0135	18415	1	0	0	1	0	0	copy fasta	KCNJ6	chr21	37602373	37921457
KCNJ6_chr21_37602373_37921457	0/0	t0136	18465	1	0	0	1	0	0	copy fasta	KCNJ6	chr21	37602373	37921457
KCNJ6_chr21_37602373_37921457	0/0	t0137	18421	1	0	1	0	0	0	copy fasta	KCNJ6	chr21	37602373	37921457
KCNJ6_chr21_37602373_37921457	0/0	t0138	18430	1	1	0	0	0	0	copy fasta	KCNJ6	chr21	37602373	37921457
KCNJ6_chr21_37602373_37921457	0/0	t0139	18416	1	1	0	0	0	0	copy fasta	KCNJ6	chr21	37602373	37921457
KCNJ6_chr21_37602373_37921457	0/1	t0140	18366	1	0	0	0	0	0	copy fasta	KCNJ6	chr21	37602373	37921457
KCNJ6_chr21_37602373_37921457	0/0	t0141	18361	1	0	1	0	0	0	copy fasta	KCNJ6	chr21	37602373	37921457
KCNJ6_chr21_37602373_37921457	1/0	t0142	18388	1	0	0	0	0	0	copy fasta	KCNJ6	chr21	37602373	37921457
KCNJ6_chr21_37602373_37921457	0/0	t0143	18373	1	1	0	0	0	0	copy fasta	KCNJ6	chr21	37602373	37921457
KCNJ6_chr21_37602373_37921457	0/0	t0144	18342	1	0	0	1	0	0	copy fasta	KCNJ6	chr21	37602373	37921457