JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
KCNJ6_chr21_37602373_37921457	0/0	t0145	18359	1	0	0	1	0	0	copy fasta	KCNJ6	chr21	37602373	37921457
KCNJ6_chr21_37602373_37921457	0/0	t0146	18352	1	0	0	0	1	0	copy fasta	KCNJ6	chr21	37602373	37921457
KCNJ6_chr21_37602373_37921457	0/0	t0147	18353	1	0	1	0	0	0	copy fasta	KCNJ6	chr21	37602373	37921457
KCNJ6_chr21_37602373_37921457	0/0	t0148	18357	1	0	0	1	0	0	copy fasta	KCNJ6	chr21	37602373	37921457
KCNJ6_chr21_37602373_37921457	0/0	t0149	18356	1	0	0	0	0	1	copy fasta	KCNJ6	chr21	37602373	37921457
KCNJ6_chr21_37602373_37921457	0/0	t0150	18361	1	0	0	1	0	0	copy fasta	KCNJ6	chr21	37602373	37921457
KCNJ6_chr21_37602373_37921457	0/0	t0151	18360	1	0	0	0	1	0	copy fasta	KCNJ6	chr21	37602373	37921457
KCNJ6_chr21_37602373_37921457	0/0	t0152	18360	1	1	0	0	0	0	copy fasta	KCNJ6	chr21	37602373	37921457
KCNJ6_chr21_37602373_37921457	0/0	t0153	18361	1	1	0	0	0	0	copy fasta	KCNJ6	chr21	37602373	37921457
KCNJ6_chr21_37602373_37921457	0/0	t0154	18364	1	1	0	0	0	0	copy fasta	KCNJ6	chr21	37602373	37921457
KCNJ6_chr21_37602373_37921457	0/0	t0155	18373	1	0	0	0	1	0	copy fasta	KCNJ6	chr21	37602373	37921457
KCNJ6_chr21_37602373_37921457	0/0	t0156	18364	1	0	1	0	0	0	copy fasta	KCNJ6	chr21	37602373	37921457
KCNJ6_chr21_37602373_37921457	0/0	t0157	18360	1	0	0	0	0	1	copy fasta	KCNJ6	chr21	37602373	37921457
KCNJ6_chr21_37602373_37921457	0/0	t0158	18372	1	0	1	0	0	0	copy fasta	KCNJ6	chr21	37602373	37921457
KCNJ6_chr21_37602373_37921457	0/0	t0159	18405	1	1	0	0	0	0	copy fasta	KCNJ6	chr21	37602373	37921457
KCNJ6_chr21_37602373_37921457	0/0	t0160	18382	1	1	0	0	0	0	copy fasta	KCNJ6	chr21	37602373	37921457
KCNJ6_chr21_37602373_37921457	0/0	t0161	18398	1	1	0	0	0	0	copy fasta	KCNJ6	chr21	37602373	37921457
KCNJ6_chr21_37602373_37921457	0/0	t0162	18440	1	0	1	0	0	0	copy fasta	KCNJ6	chr21	37602373	37921457
KCNJ6_chr21_37602373_37921457	0/0	t0163	18412	1	1	0	0	0	0	copy fasta	KCNJ6	chr21	37602373	37921457
KCNJ6_chr21_37602373_37921457	0/0	t0164	18409	1	1	0	0	0	0	copy fasta	KCNJ6	chr21	37602373	37921457
KCNJ6_chr21_37602373_37921457	0/0	t0165	18449	1	1	0	0	0	0	copy fasta	KCNJ6	chr21	37602373	37921457
KCNJ6_chr21_37602373_37921457	0/0	t0166	18448	1	1	0	0	0	0	copy fasta	KCNJ6	chr21	37602373	37921457
KCNJ6_chr21_37602373_37921457	0/0	t0167	18446	1	1	0	0	0	0	copy fasta	KCNJ6	chr21	37602373	37921457
KCNJ6_chr21_37602373_37921457	0/0	t0168	18410	1	1	0	0	0	0	copy fasta	KCNJ6	chr21	37602373	37921457
KCNJ6_chr21_37602373_37921457	0/0	t0169	18452	1	1	0	0	0	0	copy fasta	KCNJ6	chr21	37602373	37921457
KCNJ6_chr21_37602373_37921457	0/0	t0170	18464	1	0	1	0	0	0	copy fasta	KCNJ6	chr21	37602373	37921457
KCNJ6_chr21_37602373_37921457	0/0	t0171	18462	1	0	1	0	0	0	copy fasta	KCNJ6	chr21	37602373	37921457
KCNJ6_chr21_37602373_37921457	0/0	t0172	18424	1	1	0	0	0	0	copy fasta	KCNJ6	chr21	37602373	37921457
KCNJ6_chr21_37602373_37921457	0/0	t0173	18426	1	1	0	0	0	0	copy fasta	KCNJ6	chr21	37602373	37921457
KCNJ6_chr21_37602373_37921457	0/0	t0174	18417	1	1	0	0	0	0	copy fasta	KCNJ6	chr21	37602373	37921457
KCNJ6_chr21_37602373_37921457	0/0	t0175	18350	1	1	0	0	0	0	copy fasta	KCNJ6	chr21	37602373	37921457
KCNJ6_chr21_37602373_37921457	0/0	t0176	18358	1	1	0	0	0	0	copy fasta	KCNJ6	chr21	37602373	37921457
KCNJ6_chr21_37602373_37921457	0/0	t0177	18362	1	1	0	0	0	0	copy fasta	KCNJ6	chr21	37602373	37921457
KCNJ6_chr21_37602373_37921457	0/0	t0178	18343	1	1	0	0	0	0	copy fasta	KCNJ6	chr21	37602373	37921457
KCNJ6_chr21_37602373_37921457	0/0	t0179	18355	1	0	0	1	0	0	copy fasta	KCNJ6	chr21	37602373	37921457
KCNJ6_chr21_37602373_37921457	0/0	t0180	18356	1	0	0	1	0	0	copy fasta	KCNJ6	chr21	37602373	37921457
KCNJ6_chr21_37602373_37921457	0/0	t0181	18366	1	1	0	0	0	0	copy fasta	KCNJ6	chr21	37602373	37921457
KCNJ6_chr21_37602373_37921457	0/0	t0182	18363	1	0	0	1	0	0	copy fasta	KCNJ6	chr21	37602373	37921457
KCNJ6_chr21_37602373_37921457	0/0	t0183	18371	1	0	0	1	0	0	copy fasta	KCNJ6	chr21	37602373	37921457
KCNJ6_chr21_37602373_37921457	0/0	t0184	18371	1	1	0	0	0	0	copy fasta	KCNJ6	chr21	37602373	37921457
KCNJ6_chr21_37602373_37921457	0/0	t0185	18370	1	1	0	0	0	0	copy fasta	KCNJ6	chr21	37602373	37921457
KCNJ6_chr21_37602373_37921457	0/0	t0186	18360	1	1	0	0	0	0	copy fasta	KCNJ6	chr21	37602373	37921457
KCNJ6_chr21_37602373_37921457	0/0	t0187	18482	1	1	0	0	0	0	copy fasta	KCNJ6	chr21	37602373	37921457
KCNJ6_chr21_37602373_37921457	0/0	t0188	18466	1	0	1	0	0	0	copy fasta	KCNJ6	chr21	37602373	37921457
KCNJ6_chr21_37602373_37921457	0/0	t0189	18358	1	0	1	0	0	0	copy fasta	KCNJ6	chr21	37602373	37921457
KCNJ6_chr21_37602373_37921457	0/0	t0190	18454	1	0	1	0	0	0	copy fasta	KCNJ6	chr21	37602373	37921457
KCNJ8_chr12_21759955_21779706	1/1	t0001	1000	298	44	62	143	8	39	copy fasta	KCNJ8	chr12	21759955	21779706
KCNJ8_chr12_21759955_21779706	0/0	t0002	1000	11	11	0	0	0	0	copy fasta	KCNJ8	chr12	21759955	21779706
KCNJ8_chr12_21759955_21779706	0/0	t0003	1000	11	10	1	0	0	0	copy fasta	KCNJ8	chr12	21759955	21779706
KCNJ8_chr12_21759955_21779706	0/0	t0004	1000	3	3	0	0	0	0	copy fasta	KCNJ8	chr12	21759955	21779706