JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
KCNJ8_chr12_21759955_21779706	0/0	t0005	1000	2	2	0	0	0	0	copy fasta	KCNJ8	chr12	21759955	21779706
KCNJ8_chr12_21759955_21779706	0/0	t0006	1000	1	1	0	0	0	0	copy fasta	KCNJ8	chr12	21759955	21779706
KCNJ8_chr12_21759955_21779706	0/0	t0007	1000	1	1	0	0	0	0	copy fasta	KCNJ8	chr12	21759955	21779706
KCNJ8_chr12_21759955_21779706	0/0	t0008	1000	1	0	1	0	0	0	copy fasta	KCNJ8	chr12	21759955	21779706
KCNJ8_chr12_21759955_21779706	0/0	t0009	1000	1	1	0	0	0	0	copy fasta	KCNJ8	chr12	21759955	21779706
KCNJ8_chr12_21759955_21779706	0/0	t0010	1000	1	1	0	0	0	0	copy fasta	KCNJ8	chr12	21759955	21779706
KCNJ8_chr12_21759955_21779706	0/0	t0011	1000	1	0	0	0	0	1	copy fasta	KCNJ8	chr12	21759955	21779706
KCNJ8_chr12_21759955_21779706	0/0	t0012	1000	1	1	0	0	0	0	copy fasta	KCNJ8	chr12	21759955	21779706
KCNJ8_chr12_21759955_21779706	0/0	t0013	1000	1	1	0	0	0	0	copy fasta	KCNJ8	chr12	21759955	21779706
KCNJ8_chr12_21759955_21779706	0/0	t0014	1000	1	0	0	1	0	0	copy fasta	KCNJ8	chr12	21759955	21779706
KCNJ9_chr1_160076538_160095563	1/0	t0001	3021	211	35	40	104	3	28	copy fasta	KCNJ9	chr1	160076538	160095563
KCNJ9_chr1_160076538_160095563	0/1	t0002	3021	61	1	15	37	5	2	copy fasta	KCNJ9	chr1	160076538	160095563
KCNJ9_chr1_160076538_160095563	0/0	t0003	3021	41	0	6	29	0	6	copy fasta	KCNJ9	chr1	160076538	160095563
KCNJ9_chr1_160076538_160095563	0/0	t0004	3021	30	1	11	13	2	3	copy fasta	KCNJ9	chr1	160076538	160095563
KCNJ9_chr1_160076538_160095563	0/0	t0005	3021	15	11	3	0	1	0	copy fasta	KCNJ9	chr1	160076538	160095563
KCNJ9_chr1_160076538_160095563	0/0	t0006	3021	11	11	0	0	0	0	copy fasta	KCNJ9	chr1	160076538	160095563
KCNJ9_chr1_160076538_160095563	0/0	t0007	3021	8	8	0	0	0	0	copy fasta	KCNJ9	chr1	160076538	160095563
KCNJ9_chr1_160076538_160095563	0/0	t0008	3022	7	7	0	0	0	0	copy fasta	KCNJ9	chr1	160076538	160095563
KCNJ9_chr1_160076538_160095563	0/0	t0009	3021	7	7	0	0	0	0	copy fasta	KCNJ9	chr1	160076538	160095563
KCNJ9_chr1_160076538_160095563	0/0	t0010	3013	7	0	0	7	0	0	copy fasta	KCNJ9	chr1	160076538	160095563
KCNJ9_chr1_160076538_160095563	0/0	t0011	3021	3	3	0	0	0	0	copy fasta	KCNJ9	chr1	160076538	160095563
KCNJ9_chr1_160076538_160095563	0/0	t0012	3021	3	3	0	0	0	0	copy fasta	KCNJ9	chr1	160076538	160095563
KCNJ9_chr1_160076538_160095563	0/0	t0013	3000	3	0	0	3	0	0	copy fasta	KCNJ9	chr1	160076538	160095563
KCNJ9_chr1_160076538_160095563	0/0	t0014	3021	2	0	2	0	0	0	copy fasta	KCNJ9	chr1	160076538	160095563
KCNJ9_chr1_160076538_160095563	0/0	t0015	3021	2	0	0	2	0	0	copy fasta	KCNJ9	chr1	160076538	160095563
KCNJ9_chr1_160076538_160095563	0/0	t0016	3021	2	0	2	0	0	0	copy fasta	KCNJ9	chr1	160076538	160095563
KCNJ9_chr1_160076538_160095563	0/0	t0017	3021	1	0	0	0	0	1	copy fasta	KCNJ9	chr1	160076538	160095563
KCNJ9_chr1_160076538_160095563	0/0	t0018	3021	1	0	0	0	0	1	copy fasta	KCNJ9	chr1	160076538	160095563
KCNJ9_chr1_160076538_160095563	0/0	t0019	3021	1	0	0	1	0	0	copy fasta	KCNJ9	chr1	160076538	160095563
KCNJ9_chr1_160076538_160095563	0/0	t0020	3021	1	1	0	0	0	0	copy fasta	KCNJ9	chr1	160076538	160095563
KCNJ9_chr1_160076538_160095563	0/0	t0021	3021	1	0	0	0	1	0	copy fasta	KCNJ9	chr1	160076538	160095563
KCNJ9_chr1_160076538_160095563	0/0	t0022	3021	1	1	0	0	0	0	copy fasta	KCNJ9	chr1	160076538	160095563
KCNJ9_chr1_160076538_160095563	0/0	t0023	3021	1	1	0	0	0	0	copy fasta	KCNJ9	chr1	160076538	160095563
KCNJ9_chr1_160076538_160095563	0/0	t0024	3021	1	0	0	0	0	1	copy fasta	KCNJ9	chr1	160076538	160095563
KCNJ9_chr1_160076538_160095563	0/0	t0025	3021	1	1	0	0	0	0	copy fasta	KCNJ9	chr1	160076538	160095563
KCNJ9_chr1_160076538_160095563	0/0	t0026	3021	1	0	0	1	0	0	copy fasta	KCNJ9	chr1	160076538	160095563
KCNJ9_chr1_160076538_160095563	0/0	t0027	3021	1	1	0	0	0	0	copy fasta	KCNJ9	chr1	160076538	160095563
KCNJ9_chr1_160076538_160095563	0/0	t0028	3021	1	1	0	0	0	0	copy fasta	KCNJ9	chr1	160076538	160095563
KCNJ9_chr1_160076538_160095563	0/0	t0029	3021	1	0	0	1	0	0	copy fasta	KCNJ9	chr1	160076538	160095563
KCNJ9_chr1_160076538_160095563	0/0	t0030	3021	1	1	0	0	0	0	copy fasta	KCNJ9	chr1	160076538	160095563
KCNJ9_chr1_160076538_160095563	0/0	t0031	3021	1	0	1	0	0	0	copy fasta	KCNJ9	chr1	160076538	160095563
KCNJ9_chr1_160076538_160095563	0/0	t0032	3021	1	1	0	0	0	0	copy fasta	KCNJ9	chr1	160076538	160095563
KCNJ9_chr1_160076538_160095563	0/0	t0033	3021	1	1	0	0	0	0	copy fasta	KCNJ9	chr1	160076538	160095563
KCNK10_chr14_88175108_88328269	0/0	t0001	5894	41	2	4	30	1	4	copy fasta	KCNK10	chr14	88175108	88328269
KCNK10_chr14_88175108_88328269	0/0	t0002	5900	27	6	9	10	1	1	copy fasta	KCNK10	chr14	88175108	88328269
KCNK10_chr14_88175108_88328269	0/0	t0003	5886	19	7	1	11	0	0	copy fasta	KCNK10	chr14	88175108	88328269
KCNK10_chr14_88175108_88328269	0/0	t0004	5888	13	0	4	6	0	3	copy fasta	KCNK10	chr14	88175108	88328269
KCNK10_chr14_88175108_88328269	0/0	t0005	5892	10	0	9	0	1	0	copy fasta	KCNK10	chr14	88175108	88328269
KCNK10_chr14_88175108_88328269	0/0	t0006	5874	9	8	1	0	0	0	copy fasta	KCNK10	chr14	88175108	88328269
KCNK10_chr14_88175108_88328269	0/0	t0007	5898	9	2	3	2	1	1	copy fasta	KCNK10	chr14	88175108	88328269