JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
KCNK10_chr14_88175108_88328269	0/0	t0008	5896	8	0	1	6	0	1	copy fasta	KCNK10	chr14	88175108	88328269
KCNK10_chr14_88175108_88328269	0/0	t0009	5896	8	1	7	0	0	0	copy fasta	KCNK10	chr14	88175108	88328269
KCNK10_chr14_88175108_88328269	0/0	t0010	5878	7	2	0	4	1	0	copy fasta	KCNK10	chr14	88175108	88328269
KCNK10_chr14_88175108_88328269	0/0	t0011	5890	7	0	1	5	0	1	copy fasta	KCNK10	chr14	88175108	88328269
KCNK10_chr14_88175108_88328269	0/0	t0012	5888	6	6	0	0	0	0	copy fasta	KCNK10	chr14	88175108	88328269
KCNK10_chr14_88175108_88328269	0/0	t0013	5886	5	0	1	4	0	0	copy fasta	KCNK10	chr14	88175108	88328269
KCNK10_chr14_88175108_88328269	0/0	t0014	5886	5	0	1	4	0	0	copy fasta	KCNK10	chr14	88175108	88328269
KCNK10_chr14_88175108_88328269	0/0	t0015	5892	5	0	0	4	0	1	copy fasta	KCNK10	chr14	88175108	88328269
KCNK10_chr14_88175108_88328269	0/0	t0016	5892	5	0	0	5	0	0	copy fasta	KCNK10	chr14	88175108	88328269
KCNK10_chr14_88175108_88328269	0/0	t0017	5888	4	4	0	0	0	0	copy fasta	KCNK10	chr14	88175108	88328269
KCNK10_chr14_88175108_88328269	0/0	t0018	5890	4	0	2	2	0	0	copy fasta	KCNK10	chr14	88175108	88328269
KCNK10_chr14_88175108_88328269	0/0	t0019	5894	4	4	0	0	0	0	copy fasta	KCNK10	chr14	88175108	88328269
KCNK10_chr14_88175108_88328269	0/0	t0020	5888	4	0	2	2	0	0	copy fasta	KCNK10	chr14	88175108	88328269
KCNK10_chr14_88175108_88328269	0/0	t0021	5890	4	4	0	0	0	0	copy fasta	KCNK10	chr14	88175108	88328269
KCNK10_chr14_88175108_88328269	0/0	t0022	5902	4	0	2	2	0	0	copy fasta	KCNK10	chr14	88175108	88328269
KCNK10_chr14_88175108_88328269	0/0	t0023	5876	4	4	0	0	0	0	copy fasta	KCNK10	chr14	88175108	88328269
KCNK10_chr14_88175108_88328269	0/0	t0024	5890	3	1	2	0	0	0	copy fasta	KCNK10	chr14	88175108	88328269
KCNK10_chr14_88175108_88328269	0/0	t0025	5894	3	0	1	0	0	2	copy fasta	KCNK10	chr14	88175108	88328269
KCNK10_chr14_88175108_88328269	0/0	t0026	5888	3	0	0	3	0	0	copy fasta	KCNK10	chr14	88175108	88328269
KCNK10_chr14_88175108_88328269	0/0	t0027	5894	3	0	0	3	0	0	copy fasta	KCNK10	chr14	88175108	88328269
KCNK10_chr14_88175108_88328269	0/0	t0028	5876	3	3	0	0	0	0	copy fasta	KCNK10	chr14	88175108	88328269
KCNK10_chr14_88175108_88328269	0/0	t0029	5886	3	3	0	0	0	0	copy fasta	KCNK10	chr14	88175108	88328269
KCNK10_chr14_88175108_88328269	0/0	t0030	5886	3	0	1	2	0	0	copy fasta	KCNK10	chr14	88175108	88328269
KCNK10_chr14_88175108_88328269	0/0	t0031	5902	3	0	0	1	0	2	copy fasta	KCNK10	chr14	88175108	88328269
KCNK10_chr14_88175108_88328269	0/0	t0032	5904	3	0	2	1	0	0	copy fasta	KCNK10	chr14	88175108	88328269
KCNK10_chr14_88175108_88328269	0/0	t0033	5894	2	0	0	2	0	0	copy fasta	KCNK10	chr14	88175108	88328269
KCNK10_chr14_88175108_88328269	0/0	t0034	5892	2	0	0	1	0	1	copy fasta	KCNK10	chr14	88175108	88328269
KCNK10_chr14_88175108_88328269	0/0	t0035	5894	2	0	0	2	0	0	copy fasta	KCNK10	chr14	88175108	88328269
KCNK10_chr14_88175108_88328269	0/0	t0036	5886	2	2	0	0	0	0	copy fasta	KCNK10	chr14	88175108	88328269
KCNK10_chr14_88175108_88328269	0/0	t0037	5894	2	0	1	0	0	1	copy fasta	KCNK10	chr14	88175108	88328269
KCNK10_chr14_88175108_88328269	0/0	t0038	5894	2	0	1	1	0	0	copy fasta	KCNK10	chr14	88175108	88328269
KCNK10_chr14_88175108_88328269	0/0	t0039	5900	2	0	0	2	0	0	copy fasta	KCNK10	chr14	88175108	88328269
KCNK10_chr14_88175108_88328269	0/0	t0040	5890	2	0	0	1	1	0	copy fasta	KCNK10	chr14	88175108	88328269
KCNK10_chr14_88175108_88328269	0/0	t0041	5898	2	0	0	2	0	0	copy fasta	KCNK10	chr14	88175108	88328269
KCNK10_chr14_88175108_88328269	0/0	t0042	5890	2	0	1	0	1	0	copy fasta	KCNK10	chr14	88175108	88328269
KCNK10_chr14_88175108_88328269	0/0	t0043	5900	2	0	0	0	0	2	copy fasta	KCNK10	chr14	88175108	88328269
KCNK10_chr14_88175108_88328269	0/0	t0044	5900	2	0	0	0	0	2	copy fasta	KCNK10	chr14	88175108	88328269
KCNK10_chr14_88175108_88328269	0/0	t0045	5890	2	0	0	2	0	0	copy fasta	KCNK10	chr14	88175108	88328269
KCNK10_chr14_88175108_88328269	0/0	t0046	5898	2	1	1	0	0	0	copy fasta	KCNK10	chr14	88175108	88328269
KCNK10_chr14_88175108_88328269	0/0	t0047	5894	1	0	0	0	0	1	copy fasta	KCNK10	chr14	88175108	88328269
KCNK10_chr14_88175108_88328269	0/0	t0048	5890	1	0	1	0	0	0	copy fasta	KCNK10	chr14	88175108	88328269
KCNK10_chr14_88175108_88328269	0/0	t0049	5874	1	1	0	0	0	0	copy fasta	KCNK10	chr14	88175108	88328269
KCNK10_chr14_88175108_88328269	0/0	t0050	5892	1	1	0	0	0	0	copy fasta	KCNK10	chr14	88175108	88328269
KCNK10_chr14_88175108_88328269	0/0	t0051	5888	1	0	0	1	0	0	copy fasta	KCNK10	chr14	88175108	88328269
KCNK10_chr14_88175108_88328269	0/0	t0052	5900	1	0	1	0	0	0	copy fasta	KCNK10	chr14	88175108	88328269
KCNK10_chr14_88175108_88328269	0/0	t0053	5900	1	1	0	0	0	0	copy fasta	KCNK10	chr14	88175108	88328269
KCNK10_chr14_88175108_88328269	0/0	t0054	5886	1	0	1	0	0	0	copy fasta	KCNK10	chr14	88175108	88328269
KCNK10_chr14_88175108_88328269	0/0	t0055	5890	1	0	1	0	0	0	copy fasta	KCNK10	chr14	88175108	88328269
KCNK10_chr14_88175108_88328269	0/0	t0056	5890	1	0	0	0	0	1	copy fasta	KCNK10	chr14	88175108	88328269
KCNK10_chr14_88175108_88328269	0/0	t0057	5888	1	0	0	0	0	1	copy fasta	KCNK10	chr14	88175108	88328269