JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
KCNK10_chr14_88175108_88328269	0/0	t0108	5900	1	0	0	0	0	1	copy fasta	KCNK10	chr14	88175108	88328269
KCNK10_chr14_88175108_88328269	0/0	t0109	5886	1	1	0	0	0	0	copy fasta	KCNK10	chr14	88175108	88328269
KCNK10_chr14_88175108_88328269	0/0	t0110	5896	1	1	0	0	0	0	copy fasta	KCNK10	chr14	88175108	88328269
KCNK10_chr14_88175108_88328269	0/0	t0111	5892	1	0	0	1	0	0	copy fasta	KCNK10	chr14	88175108	88328269
KCNK10_chr14_88175108_88328269	0/0	t0112	5892	1	1	0	0	0	0	copy fasta	KCNK10	chr14	88175108	88328269
KCNK10_chr14_88175108_88328269	0/0	t0113	5894	1	0	0	0	0	1	copy fasta	KCNK10	chr14	88175108	88328269
KCNK12_chr2_47504290_47575985	0/0	t0001	12272	51	8	5	33	1	4	copy fasta	KCNK12	chr2	47504290	47575985
KCNK12_chr2_47504290_47575985	1/1	t0002	12272	40	3	8	17	2	8	copy fasta	KCNK12	chr2	47504290	47575985
KCNK12_chr2_47504290_47575985	0/0	t0003	12272	37	2	4	25	0	6	copy fasta	KCNK12	chr2	47504290	47575985
KCNK12_chr2_47504290_47575985	0/0	t0004	12272	31	1	5	19	3	3	copy fasta	KCNK12	chr2	47504290	47575985
KCNK12_chr2_47504290_47575985	0/0	t0005	12272	16	0	2	12	0	2	copy fasta	KCNK12	chr2	47504290	47575985
KCNK12_chr2_47504290_47575985	0/0	t0006	12272	15	5	2	5	1	2	copy fasta	KCNK12	chr2	47504290	47575985
KCNK12_chr2_47504290_47575985	0/0	t0007	12272	14	14	0	0	0	0	copy fasta	KCNK12	chr2	47504290	47575985
KCNK12_chr2_47504290_47575985	0/0	t0008	12272	10	1	4	4	0	1	copy fasta	KCNK12	chr2	47504290	47575985
KCNK12_chr2_47504290_47575985	0/0	t0009	12272	7	6	1	0	0	0	copy fasta	KCNK12	chr2	47504290	47575985
KCNK12_chr2_47504290_47575985	0/0	t0010	12272	6	0	0	0	1	5	copy fasta	KCNK12	chr2	47504290	47575985
KCNK12_chr2_47504290_47575985	0/0	t0011	12272	6	4	0	0	0	2	copy fasta	KCNK12	chr2	47504290	47575985
KCNK12_chr2_47504290_47575985	0/0	t0012	12273	6	0	0	6	0	0	copy fasta	KCNK12	chr2	47504290	47575985
KCNK12_chr2_47504290_47575985	0/0	t0013	12272	5	0	0	5	0	0	copy fasta	KCNK12	chr2	47504290	47575985
KCNK12_chr2_47504290_47575985	0/0	t0014	12264	5	0	0	5	0	0	copy fasta	KCNK12	chr2	47504290	47575985
KCNK12_chr2_47504290_47575985	0/0	t0015	12272	4	0	2	1	0	1	copy fasta	KCNK12	chr2	47504290	47575985
KCNK12_chr2_47504290_47575985	0/0	t0016	12272	4	0	4	0	0	0	copy fasta	KCNK12	chr2	47504290	47575985
KCNK12_chr2_47504290_47575985	0/0	t0017	12272	4	0	0	4	0	0	copy fasta	KCNK12	chr2	47504290	47575985
KCNK12_chr2_47504290_47575985	0/0	t0018	12272	4	0	1	3	0	0	copy fasta	KCNK12	chr2	47504290	47575985
KCNK12_chr2_47504290_47575985	0/0	t0019	12272	4	0	1	2	1	0	copy fasta	KCNK12	chr2	47504290	47575985
KCNK12_chr2_47504290_47575985	0/0	t0020	12272	3	0	1	2	0	0	copy fasta	KCNK12	chr2	47504290	47575985
KCNK12_chr2_47504290_47575985	0/0	t0021	12272	3	3	0	0	0	0	copy fasta	KCNK12	chr2	47504290	47575985
KCNK12_chr2_47504290_47575985	0/0	t0022	12272	3	0	0	3	0	0	copy fasta	KCNK12	chr2	47504290	47575985
KCNK12_chr2_47504290_47575985	0/0	t0023	12267	3	3	0	0	0	0	copy fasta	KCNK12	chr2	47504290	47575985
KCNK12_chr2_47504290_47575985	0/0	t0024	12272	3	3	0	0	0	0	copy fasta	KCNK12	chr2	47504290	47575985
KCNK12_chr2_47504290_47575985	0/0	t0025	12276	3	2	1	0	0	0	copy fasta	KCNK12	chr2	47504290	47575985
KCNK12_chr2_47504290_47575985	0/0	t0026	12272	3	0	3	0	0	0	copy fasta	KCNK12	chr2	47504290	47575985
KCNK12_chr2_47504290_47575985	0/0	t0027	12272	2	2	0	0	0	0	copy fasta	KCNK12	chr2	47504290	47575985
KCNK12_chr2_47504290_47575985	0/0	t0028	12272	2	0	1	0	0	1	copy fasta	KCNK12	chr2	47504290	47575985
KCNK12_chr2_47504290_47575985	0/0	t0029	12272	2	0	0	0	0	2	copy fasta	KCNK12	chr2	47504290	47575985
KCNK12_chr2_47504290_47575985	0/0	t0030	12272	2	2	0	0	0	0	copy fasta	KCNK12	chr2	47504290	47575985
KCNK12_chr2_47504290_47575985	0/0	t0031	12272	2	0	0	2	0	0	copy fasta	KCNK12	chr2	47504290	47575985
KCNK12_chr2_47504290_47575985	0/0	t0032	12272	2	2	0	0	0	0	copy fasta	KCNK12	chr2	47504290	47575985
KCNK12_chr2_47504290_47575985	0/0	t0033	12272	2	2	0	0	0	0	copy fasta	KCNK12	chr2	47504290	47575985
KCNK12_chr2_47504290_47575985	0/0	t0034	12272	2	2	0	0	0	0	copy fasta	KCNK12	chr2	47504290	47575985
KCNK12_chr2_47504290_47575985	0/0	t0035	12272	2	0	0	2	0	0	copy fasta	KCNK12	chr2	47504290	47575985
KCNK12_chr2_47504290_47575985	0/0	t0036	12272	2	0	2	0	0	0	copy fasta	KCNK12	chr2	47504290	47575985
KCNK12_chr2_47504290_47575985	0/0	t0037	12272	2	2	0	0	0	0	copy fasta	KCNK12	chr2	47504290	47575985
KCNK12_chr2_47504290_47575985	0/0	t0038	12272	2	0	0	2	0	0	copy fasta	KCNK12	chr2	47504290	47575985
KCNK12_chr2_47504290_47575985	0/0	t0039	12272	2	0	1	0	0	1	copy fasta	KCNK12	chr2	47504290	47575985
KCNK12_chr2_47504290_47575985	0/0	t0040	12272	2	0	0	2	0	0	copy fasta	KCNK12	chr2	47504290	47575985
KCNK12_chr2_47504290_47575985	0/0	t0041	12272	2	0	0	2	0	0	copy fasta	KCNK12	chr2	47504290	47575985
KCNK12_chr2_47504290_47575985	0/0	t0042	12272	1	1	0	0	0	0	copy fasta	KCNK12	chr2	47504290	47575985
KCNK12_chr2_47504290_47575985	0/0	t0043	12272	1	0	1	0	0	0	copy fasta	KCNK12	chr2	47504290	47575985
KCNK12_chr2_47504290_47575985	0/0	t0044	12272	1	1	0	0	0	0	copy fasta	KCNK12	chr2	47504290	47575985