JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
KCNK12_chr2_47504290_47575985	0/0	t0045	12272	1	0	0	0	0	1	copy fasta	KCNK12	chr2	47504290	47575985
KCNK12_chr2_47504290_47575985	0/0	t0046	12272	1	0	0	1	0	0	copy fasta	KCNK12	chr2	47504290	47575985
KCNK12_chr2_47504290_47575985	0/0	t0047	12272	1	0	0	0	0	1	copy fasta	KCNK12	chr2	47504290	47575985
KCNK12_chr2_47504290_47575985	0/0	t0048	12272	1	0	0	1	0	0	copy fasta	KCNK12	chr2	47504290	47575985
KCNK12_chr2_47504290_47575985	0/0	t0049	12272	1	0	1	0	0	0	copy fasta	KCNK12	chr2	47504290	47575985
KCNK12_chr2_47504290_47575985	0/0	t0050	12272	1	0	1	0	0	0	copy fasta	KCNK12	chr2	47504290	47575985
KCNK12_chr2_47504290_47575985	0/0	t0051	12264	1	0	0	1	0	0	copy fasta	KCNK12	chr2	47504290	47575985
KCNK12_chr2_47504290_47575985	0/0	t0052	12272	1	0	1	0	0	0	copy fasta	KCNK12	chr2	47504290	47575985
KCNK12_chr2_47504290_47575985	0/0	t0053	12272	1	1	0	0	0	0	copy fasta	KCNK12	chr2	47504290	47575985
KCNK12_chr2_47504290_47575985	0/0	t0054	12272	1	0	0	0	0	1	copy fasta	KCNK12	chr2	47504290	47575985
KCNK12_chr2_47504290_47575985	0/0	t0055	12272	1	0	1	0	0	0	copy fasta	KCNK12	chr2	47504290	47575985
KCNK12_chr2_47504290_47575985	0/0	t0056	12272	1	1	0	0	0	0	copy fasta	KCNK12	chr2	47504290	47575985
KCNK12_chr2_47504290_47575985	0/0	t0057	12272	1	0	0	1	0	0	copy fasta	KCNK12	chr2	47504290	47575985
KCNK12_chr2_47504290_47575985	0/0	t0058	12272	1	1	0	0	0	0	copy fasta	KCNK12	chr2	47504290	47575985
KCNK12_chr2_47504290_47575985	0/0	t0059	12272	1	1	0	0	0	0	copy fasta	KCNK12	chr2	47504290	47575985
KCNK12_chr2_47504290_47575985	0/0	t0060	12272	1	1	0	0	0	0	copy fasta	KCNK12	chr2	47504290	47575985
KCNK12_chr2_47504290_47575985	0/0	t0061	12272	1	0	1	0	0	0	copy fasta	KCNK12	chr2	47504290	47575985
KCNK12_chr2_47504290_47575985	0/0	t0062	12272	1	1	0	0	0	0	copy fasta	KCNK12	chr2	47504290	47575985
KCNK12_chr2_47504290_47575985	0/0	t0063	12272	1	1	0	0	0	0	copy fasta	KCNK12	chr2	47504290	47575985
KCNK12_chr2_47504290_47575985	0/0	t0064	12272	1	1	0	0	0	0	copy fasta	KCNK12	chr2	47504290	47575985
KCNK12_chr2_47504290_47575985	0/0	t0065	12272	1	0	1	0	0	0	copy fasta	KCNK12	chr2	47504290	47575985
KCNK12_chr2_47504290_47575985	0/0	t0066	12272	1	0	0	0	1	0	copy fasta	KCNK12	chr2	47504290	47575985
KCNK12_chr2_47504290_47575985	0/0	t0067	12272	1	0	0	1	0	0	copy fasta	KCNK12	chr2	47504290	47575985
KCNK12_chr2_47504290_47575985	0/0	t0068	12272	1	1	0	0	0	0	copy fasta	KCNK12	chr2	47504290	47575985
KCNK12_chr2_47504290_47575985	0/0	t0069	12272	1	1	0	0	0	0	copy fasta	KCNK12	chr2	47504290	47575985
KCNK12_chr2_47504290_47575985	0/0	t0070	12272	1	0	0	1	0	0	copy fasta	KCNK12	chr2	47504290	47575985
KCNK12_chr2_47504290_47575985	0/0	t0071	12272	1	0	1	0	0	0	copy fasta	KCNK12	chr2	47504290	47575985
KCNK12_chr2_47504290_47575985	0/0	t0072	12272	1	0	0	1	0	0	copy fasta	KCNK12	chr2	47504290	47575985
KCNK12_chr2_47504290_47575985	0/0	t0073	12267	1	1	0	0	0	0	copy fasta	KCNK12	chr2	47504290	47575985
KCNK12_chr2_47504290_47575985	0/0	t0074	12272	1	1	0	0	0	0	copy fasta	KCNK12	chr2	47504290	47575985
KCNK12_chr2_47504290_47575985	0/0	t0075	12272	1	1	0	0	0	0	copy fasta	KCNK12	chr2	47504290	47575985
KCNK12_chr2_47504290_47575985	0/0	t0076	12272	1	0	0	1	0	0	copy fasta	KCNK12	chr2	47504290	47575985
KCNK12_chr2_47504290_47575985	0/0	t0077	12272	1	0	0	0	0	1	copy fasta	KCNK12	chr2	47504290	47575985
KCNK12_chr2_47504290_47575985	0/0	t0078	12272	1	0	0	1	0	0	copy fasta	KCNK12	chr2	47504290	47575985
KCNK12_chr2_47504290_47575985	0/0	t0079	12272	1	1	0	0	0	0	copy fasta	KCNK12	chr2	47504290	47575985
KCNK12_chr2_47504290_47575985	0/0	t0080	12272	1	0	0	1	0	0	copy fasta	KCNK12	chr2	47504290	47575985
KCNK12_chr2_47504290_47575985	0/0	t0081	12272	1	1	0	0	0	0	copy fasta	KCNK12	chr2	47504290	47575985
KCNK12_chr2_47504290_47575985	0/0	t0082	12272	1	1	0	0	0	0	copy fasta	KCNK12	chr2	47504290	47575985
KCNK12_chr2_47504290_47575985	0/0	t0083	12272	1	0	0	1	0	0	copy fasta	KCNK12	chr2	47504290	47575985
KCNK12_chr2_47504290_47575985	0/0	t0084	12272	1	0	0	0	0	1	copy fasta	KCNK12	chr2	47504290	47575985
KCNK12_chr2_47504290_47575985	0/0	t0085	12272	1	1	0	0	0	0	copy fasta	KCNK12	chr2	47504290	47575985
KCNK12_chr2_47504290_47575985	0/0	t0086	12272	1	1	0	0	0	0	copy fasta	KCNK12	chr2	47504290	47575985
KCNK12_chr2_47504290_47575985	0/0	t0087	12272	1	1	0	0	0	0	copy fasta	KCNK12	chr2	47504290	47575985
KCNK12_chr2_47504290_47575985	0/0	t0088	12272	1	0	0	1	0	0	copy fasta	KCNK12	chr2	47504290	47575985
KCNK12_chr2_47504290_47575985	0/0	t0089	12272	1	0	1	0	0	0	copy fasta	KCNK12	chr2	47504290	47575985
KCNK12_chr2_47504290_47575985	0/0	t0090	12272	1	0	0	0	0	1	copy fasta	KCNK12	chr2	47504290	47575985
KCNK12_chr2_47504290_47575985	0/0	t0091	12272	1	0	0	1	0	0	copy fasta	KCNK12	chr2	47504290	47575985
KCNK12_chr2_47504290_47575985	0/0	t0092	12272	1	0	1	0	0	0	copy fasta	KCNK12	chr2	47504290	47575985
KCNK12_chr2_47504290_47575985	0/0	t0093	12272	1	0	0	1	0	0	copy fasta	KCNK12	chr2	47504290	47575985
KCNK12_chr2_47504290_47575985	0/0	t0094	12272	1	1	0	0	0	0	copy fasta	KCNK12	chr2	47504290	47575985