JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
KCNK12_chr2_47504290_47575985	0/0	t0095	12272	1	1	0	0	0	0	copy fasta	KCNK12	chr2	47504290	47575985
KCNK12_chr2_47504290_47575985	0/0	t0096	12272	1	0	1	0	0	0	copy fasta	KCNK12	chr2	47504290	47575985
KCNK12_chr2_47504290_47575985	0/0	t0097	12272	1	0	0	1	0	0	copy fasta	KCNK12	chr2	47504290	47575985
KCNK12_chr2_47504290_47575985	0/0	t0098	12272	1	0	0	1	0	0	copy fasta	KCNK12	chr2	47504290	47575985
KCNK12_chr2_47504290_47575985	0/0	t0099	12272	1	0	1	0	0	0	copy fasta	KCNK12	chr2	47504290	47575985
KCNK12_chr2_47504290_47575985	0/0	t0100	12272	1	0	0	1	0	0	copy fasta	KCNK12	chr2	47504290	47575985
KCNK12_chr2_47504290_47575985	0/0	t0101	12272	1	0	1	0	0	0	copy fasta	KCNK12	chr2	47504290	47575985
KCNK12_chr2_47504290_47575985	0/0	t0102	12272	1	0	0	0	1	0	copy fasta	KCNK12	chr2	47504290	47575985
KCNK12_chr2_47504290_47575985	0/0	t0103	12272	1	0	0	1	0	0	copy fasta	KCNK12	chr2	47504290	47575985
KCNK12_chr2_47504290_47575985	0/0	t0104	12272	1	0	0	1	0	0	copy fasta	KCNK12	chr2	47504290	47575985
KCNK12_chr2_47504290_47575985	0/0	t0105	12272	1	0	0	1	0	0	copy fasta	KCNK12	chr2	47504290	47575985
KCNK12_chr2_47504290_47575985	0/0	t0106	12273	1	0	0	1	0	0	copy fasta	KCNK12	chr2	47504290	47575985
KCNK12_chr2_47504290_47575985	0/0	t0107	12272	1	0	0	0	1	0	copy fasta	KCNK12	chr2	47504290	47575985
KCNK12_chr2_47504290_47575985	0/0	t0108	12272	1	0	1	0	0	0	copy fasta	KCNK12	chr2	47504290	47575985
KCNK12_chr2_47504290_47575985	0/0	t0109	12272	1	0	0	1	0	0	copy fasta	KCNK12	chr2	47504290	47575985
KCNK13_chr14_90056994_90190853	0/0	t0001	1063	175	69	25	62	5	14	copy fasta	KCNK13	chr14	90056994	90190853
KCNK13_chr14_90056994_90190853	0/1	t0002	1063	78	3	13	50	1	10	copy fasta	KCNK13	chr14	90056994	90190853
KCNK13_chr14_90056994_90190853	1/0	t0003	1063	58	9	26	4	6	12	copy fasta	KCNK13	chr14	90056994	90190853
KCNK13_chr14_90056994_90190853	0/0	t0004	1063	3	3	0	0	0	0	copy fasta	KCNK13	chr14	90056994	90190853
KCNK13_chr14_90056994_90190853	0/0	t0005	1063	3	3	0	0	0	0	copy fasta	KCNK13	chr14	90056994	90190853
KCNK13_chr14_90056994_90190853	0/0	t0006	1063	1	1	0	0	0	0	copy fasta	KCNK13	chr14	90056994	90190853
KCNK13_chr14_90056994_90190853	0/0	t0007	1063	1	1	0	0	0	0	copy fasta	KCNK13	chr14	90056994	90190853
KCNK13_chr14_90056994_90190853	0/0	t0008	1063	1	1	0	0	0	0	copy fasta	KCNK13	chr14	90056994	90190853
KCNK15_chr20_44740865_44757313	1/1	t0001	1522	346	55	64	176	8	41	copy fasta	KCNK15	chr20	44740865	44757313
KCNK15_chr20_44740865_44757313	0/0	t0002	1522	41	21	3	16	0	1	copy fasta	KCNK15	chr20	44740865	44757313
KCNK15_chr20_44740865_44757313	0/0	t0003	1522	10	7	3	0	0	0	copy fasta	KCNK15	chr20	44740865	44757313
KCNK15_chr20_44740865_44757313	0/0	t0004	1522	8	2	4	0	1	1	copy fasta	KCNK15	chr20	44740865	44757313
KCNK15_chr20_44740865_44757313	0/0	t0005	1523	4	4	0	0	0	0	copy fasta	KCNK15	chr20	44740865	44757313
KCNK15_chr20_44740865_44757313	0/0	t0006	1522	3	0	0	0	3	0	copy fasta	KCNK15	chr20	44740865	44757313
KCNK15_chr20_44740865_44757313	0/0	t0007	1522	2	0	0	2	0	0	copy fasta	KCNK15	chr20	44740865	44757313
KCNK15_chr20_44740865_44757313	0/0	t0008	1522	1	1	0	0	0	0	copy fasta	KCNK15	chr20	44740865	44757313
KCNK15_chr20_44740865_44757313	0/0	t0009	1522	1	1	0	0	0	0	copy fasta	KCNK15	chr20	44740865	44757313
KCNK15_chr20_44740865_44757313	0/0	t0010	1522	1	0	0	0	0	1	copy fasta	KCNK15	chr20	44740865	44757313
KCNK15_chr20_44740865_44757313	0/0	t0011	1485	1	1	0	0	0	0	copy fasta	KCNK15	chr20	44740865	44757313
KCNK15_chr20_44740865_44757313	0/0	t0012	1522	1	0	0	1	0	0	copy fasta	KCNK15	chr20	44740865	44757313
KCNK15_chr20_44740865_44757313	0/0	t0013	1522	1	0	0	1	0	0	copy fasta	KCNK15	chr20	44740865	44757313
KCNK15_chr20_44740865_44757313	0/0	t0014	1522	1	1	0	0	0	0	copy fasta	KCNK15	chr20	44740865	44757313
KCNK15_chr20_44740865_44757313	0/0	t0015	1522	1	1	0	0	0	0	copy fasta	KCNK15	chr20	44740865	44757313
KCNK16_chr6_39311171_39327702	1/1	t0001	211	434	91	77	201	16	47	copy fasta	KCNK16	chr6	39311171	39327702
KCNK16_chr6_39311171_39327702	0/0	t0002	211	8	7	1	0	0	0	copy fasta	KCNK16	chr6	39311171	39327702
KCNK16_chr6_39311171_39327702	0/0	t0003	211	8	0	0	6	0	2	copy fasta	KCNK16	chr6	39311171	39327702
KCNK16_chr6_39311171_39327702	0/0	t0004	211	5	0	0	5	0	0	copy fasta	KCNK16	chr6	39311171	39327702
KCNK16_chr6_39311171_39327702	0/0	t0005	211	1	0	0	0	0	1	copy fasta	KCNK16	chr6	39311171	39327702
KCNK17_chr6_39294001_39319419	1/1	t0001	526	430	93	73	201	17	44	copy fasta	KCNK17	chr6	39294001	39319419
KCNK17_chr6_39294001_39319419	0/0	t0002	526	15	1	4	5	0	5	copy fasta	KCNK17	chr6	39294001	39319419
KCNK17_chr6_39294001_39319419	0/0	t0003	526	3	3	0	0	0	0	copy fasta	KCNK17	chr6	39294001	39319419
KCNK17_chr6_39294001_39319419	0/0	t0004	526	2	0	2	0	0	0	copy fasta	KCNK17	chr6	39294001	39319419
KCNK17_chr6_39294001_39319419	0/0	t0005	526	1	1	0	0	0	0	copy fasta	KCNK17	chr6	39294001	39319419
KCNK17_chr6_39294001_39319419	0/0	t0006	526	1	0	0	0	0	1	copy fasta	KCNK17	chr6	39294001	39319419
KCNK17_chr6_39294001_39319419	0/0	t0007	526	1	0	0	0	1	0	copy fasta	KCNK17	chr6	39294001	39319419