JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
KCNK17_chr6_39294001_39319419	0/0	t0008	526	1	0	1	0	0	0	copy fasta	KCNK17	chr6	39294001	39319419
KCNK1_chr1_233609106_233677514	0/0	t0001	1063	127	35	18	67	1	6	copy fasta	KCNK1	chr1	233609106	233677514
KCNK1_chr1_233609106_233677514	0/0	t0002	1051	120	8	23	62	5	22	copy fasta	KCNK1	chr1	233609106	233677514
KCNK1_chr1_233609106_233677514	0/0	t0003	1063	90	18	13	40	3	16	copy fasta	KCNK1	chr1	233609106	233677514
KCNK1_chr1_233609106_233677514	0/1	t0004	1049	20	2	4	7	2	4	copy fasta	KCNK1	chr1	233609106	233677514
KCNK1_chr1_233609106_233677514	0/0	t0005	1061	19	4	10	2	1	2	copy fasta	KCNK1	chr1	233609106	233677514
KCNK1_chr1_233609106_233677514	0/0	t0006	1061	17	8	4	3	2	0	copy fasta	KCNK1	chr1	233609106	233677514
KCNK1_chr1_233609106_233677514	0/0	t0007	1063	10	7	3	0	0	0	copy fasta	KCNK1	chr1	233609106	233677514
KCNK1_chr1_233609106_233677514	0/0	t0008	1063	6	6	0	0	0	0	copy fasta	KCNK1	chr1	233609106	233677514
KCNK1_chr1_233609106_233677514	0/0	t0009	1063	5	5	0	0	0	0	copy fasta	KCNK1	chr1	233609106	233677514
KCNK1_chr1_233609106_233677514	0/0	t0010	1063	4	3	1	0	0	0	copy fasta	KCNK1	chr1	233609106	233677514
KCNK1_chr1_233609106_233677514	1/0	t0011	1051	1	0	0	0	0	0	copy fasta	KCNK1	chr1	233609106	233677514
KCNK1_chr1_233609106_233677514	0/0	t0012	1063	1	0	0	1	0	0	copy fasta	KCNK1	chr1	233609106	233677514
KCNK1_chr1_233609106_233677514	0/0	t0013	1051	1	1	0	0	0	0	copy fasta	KCNK1	chr1	233609106	233677514
KCNK1_chr1_233609106_233677514	0/0	t0014	1048	1	1	0	0	0	0	copy fasta	KCNK1	chr1	233609106	233677514
KCNK2_chr1_215077737_215242090	0/0	t0001	2606	23	6	4	10	1	2	copy fasta	KCNK2	chr1	215077737	215242090
KCNK2_chr1_215077737_215242090	0/0	t0002	2610	21	5	1	14	0	1	copy fasta	KCNK2	chr1	215077737	215242090
KCNK2_chr1_215077737_215242090	0/0	t0003	2591	17	0	3	10	2	2	copy fasta	KCNK2	chr1	215077737	215242090
KCNK2_chr1_215077737_215242090	0/1	t0004	2614	12	0	2	6	0	3	copy fasta	KCNK2	chr1	215077737	215242090
KCNK2_chr1_215077737_215242090	0/0	t0005	2595	11	1	3	4	0	3	copy fasta	KCNK2	chr1	215077737	215242090
KCNK2_chr1_215077737_215242090	0/0	t0006	2602	10	2	1	5	1	1	copy fasta	KCNK2	chr1	215077737	215242090
KCNK2_chr1_215077737_215242090	0/0	t0007	2587	9	0	1	6	0	2	copy fasta	KCNK2	chr1	215077737	215242090
KCNK2_chr1_215077737_215242090	0/0	t0008	2595	8	1	0	7	0	0	copy fasta	KCNK2	chr1	215077737	215242090
KCNK2_chr1_215077737_215242090	0/0	t0009	2595	6	1	2	1	1	1	copy fasta	KCNK2	chr1	215077737	215242090
KCNK2_chr1_215077737_215242090	0/0	t0010	2592	6	1	0	3	0	2	copy fasta	KCNK2	chr1	215077737	215242090
KCNK2_chr1_215077737_215242090	0/0	t0011	2596	6	1	2	3	0	0	copy fasta	KCNK2	chr1	215077737	215242090
KCNK2_chr1_215077737_215242090	0/0	t0012	2609	6	0	1	4	0	1	copy fasta	KCNK2	chr1	215077737	215242090
KCNK2_chr1_215077737_215242090	0/0	t0013	2599	5	3	0	2	0	0	copy fasta	KCNK2	chr1	215077737	215242090
KCNK2_chr1_215077737_215242090	0/0	t0014	2599	5	5	0	0	0	0	copy fasta	KCNK2	chr1	215077737	215242090
KCNK2_chr1_215077737_215242090	0/0	t0015	2605	5	1	1	1	1	1	copy fasta	KCNK2	chr1	215077737	215242090
KCNK2_chr1_215077737_215242090	0/0	t0016	2613	5	2	2	1	0	0	copy fasta	KCNK2	chr1	215077737	215242090
KCNK2_chr1_215077737_215242090	0/0	t0017	2594	5	0	0	4	0	1	copy fasta	KCNK2	chr1	215077737	215242090
KCNK2_chr1_215077737_215242090	1/0	t0018	2595	4	3	0	0	0	0	copy fasta	KCNK2	chr1	215077737	215242090
KCNK2_chr1_215077737_215242090	0/0	t0019	2599	4	0	0	3	0	1	copy fasta	KCNK2	chr1	215077737	215242090
KCNK2_chr1_215077737_215242090	0/0	t0020	2588	4	0	0	3	0	1	copy fasta	KCNK2	chr1	215077737	215242090
KCNK2_chr1_215077737_215242090	0/0	t0021	2599	4	0	1	2	0	1	copy fasta	KCNK2	chr1	215077737	215242090
KCNK2_chr1_215077737_215242090	0/0	t0022	2607	3	0	0	2	0	1	copy fasta	KCNK2	chr1	215077737	215242090
KCNK2_chr1_215077737_215242090	0/0	t0023	2591	3	0	0	3	0	0	copy fasta	KCNK2	chr1	215077737	215242090
KCNK2_chr1_215077737_215242090	0/0	t0024	2603	3	2	1	0	0	0	copy fasta	KCNK2	chr1	215077737	215242090
KCNK2_chr1_215077737_215242090	0/0	t0025	2595	3	3	0	0	0	0	copy fasta	KCNK2	chr1	215077737	215242090
KCNK2_chr1_215077737_215242090	0/0	t0026	2590	3	1	0	2	0	0	copy fasta	KCNK2	chr1	215077737	215242090
KCNK2_chr1_215077737_215242090	0/0	t0027	2598	3	0	0	3	0	0	copy fasta	KCNK2	chr1	215077737	215242090
KCNK2_chr1_215077737_215242090	0/0	t0028	2575	3	0	0	3	0	0	copy fasta	KCNK2	chr1	215077737	215242090
KCNK2_chr1_215077737_215242090	0/0	t0029	2596	3	0	1	0	2	0	copy fasta	KCNK2	chr1	215077737	215242090
KCNK2_chr1_215077737_215242090	0/0	t0030	2593	3	0	2	0	0	1	copy fasta	KCNK2	chr1	215077737	215242090
KCNK2_chr1_215077737_215242090	0/0	t0031	2603	2	0	1	0	0	1	copy fasta	KCNK2	chr1	215077737	215242090
KCNK2_chr1_215077737_215242090	0/0	t0032	2611	2	0	0	2	0	0	copy fasta	KCNK2	chr1	215077737	215242090
KCNK2_chr1_215077737_215242090	0/0	t0033	2606	2	2	0	0	0	0	copy fasta	KCNK2	chr1	215077737	215242090
KCNK2_chr1_215077737_215242090	0/0	t0034	2610	2	1	1	0	0	0	copy fasta	KCNK2	chr1	215077737	215242090
KCNK2_chr1_215077737_215242090	0/0	t0035	2618	2	1	0	1	0	0	copy fasta	KCNK2	chr1	215077737	215242090