JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
KCNK2_chr1_215077737_215242090	0/0	t0036	2591	2	1	1	0	0	0	copy fasta	KCNK2	chr1	215077737	215242090
KCNK2_chr1_215077737_215242090	0/0	t0037	2607	2	2	0	0	0	0	copy fasta	KCNK2	chr1	215077737	215242090
KCNK2_chr1_215077737_215242090	0/0	t0038	2600	2	0	1	1	0	0	copy fasta	KCNK2	chr1	215077737	215242090
KCNK2_chr1_215077737_215242090	0/0	t0039	2601	2	0	2	0	0	0	copy fasta	KCNK2	chr1	215077737	215242090
KCNK2_chr1_215077737_215242090	0/0	t0040	2594	2	0	2	0	0	0	copy fasta	KCNK2	chr1	215077737	215242090
KCNK2_chr1_215077737_215242090	0/0	t0041	2596	1	0	1	0	0	0	copy fasta	KCNK2	chr1	215077737	215242090
KCNK2_chr1_215077737_215242090	0/0	t0042	2616	1	0	0	1	0	0	copy fasta	KCNK2	chr1	215077737	215242090
KCNK2_chr1_215077737_215242090	0/0	t0043	2601	1	1	0	0	0	0	copy fasta	KCNK2	chr1	215077737	215242090
KCNK2_chr1_215077737_215242090	0/0	t0044	2582	1	0	0	1	0	0	copy fasta	KCNK2	chr1	215077737	215242090
KCNK2_chr1_215077737_215242090	0/0	t0045	2602	1	0	0	0	0	1	copy fasta	KCNK2	chr1	215077737	215242090
KCNK2_chr1_215077737_215242090	0/0	t0046	2584	1	0	0	0	0	1	copy fasta	KCNK2	chr1	215077737	215242090
KCNK2_chr1_215077737_215242090	0/0	t0047	2607	1	1	0	0	0	0	copy fasta	KCNK2	chr1	215077737	215242090
KCNK2_chr1_215077737_215242090	0/0	t0048	2611	1	1	0	0	0	0	copy fasta	KCNK2	chr1	215077737	215242090
KCNK2_chr1_215077737_215242090	0/0	t0049	2615	1	0	0	0	0	1	copy fasta	KCNK2	chr1	215077737	215242090
KCNK2_chr1_215077737_215242090	0/0	t0050	2619	1	0	0	0	0	1	copy fasta	KCNK2	chr1	215077737	215242090
KCNK2_chr1_215077737_215242090	0/0	t0051	2596	1	1	0	0	0	0	copy fasta	KCNK2	chr1	215077737	215242090
KCNK2_chr1_215077737_215242090	0/0	t0052	2596	1	1	0	0	0	0	copy fasta	KCNK2	chr1	215077737	215242090
KCNK2_chr1_215077737_215242090	0/0	t0053	2593	1	0	1	0	0	0	copy fasta	KCNK2	chr1	215077737	215242090
KCNK2_chr1_215077737_215242090	0/0	t0054	2591	1	0	0	0	0	1	copy fasta	KCNK2	chr1	215077737	215242090
KCNK2_chr1_215077737_215242090	0/0	t0055	2595	1	1	0	0	0	0	copy fasta	KCNK2	chr1	215077737	215242090
KCNK2_chr1_215077737_215242090	0/0	t0056	2617	1	1	0	0	0	0	copy fasta	KCNK2	chr1	215077737	215242090
KCNK2_chr1_215077737_215242090	0/0	t0057	2606	1	1	0	0	0	0	copy fasta	KCNK2	chr1	215077737	215242090
KCNK2_chr1_215077737_215242090	0/0	t0058	2606	1	0	0	1	0	0	copy fasta	KCNK2	chr1	215077737	215242090
KCNK2_chr1_215077737_215242090	0/0	t0059	2610	1	1	0	0	0	0	copy fasta	KCNK2	chr1	215077737	215242090
KCNK2_chr1_215077737_215242090	0/0	t0060	2614	1	1	0	0	0	0	copy fasta	KCNK2	chr1	215077737	215242090
KCNK2_chr1_215077737_215242090	0/0	t0061	2618	1	0	0	1	0	0	copy fasta	KCNK2	chr1	215077737	215242090
KCNK2_chr1_215077737_215242090	0/0	t0062	2587	1	0	1	0	0	0	copy fasta	KCNK2	chr1	215077737	215242090
KCNK2_chr1_215077737_215242090	0/0	t0063	2591	1	1	0	0	0	0	copy fasta	KCNK2	chr1	215077737	215242090
KCNK2_chr1_215077737_215242090	0/0	t0064	2595	1	1	0	0	0	0	copy fasta	KCNK2	chr1	215077737	215242090
KCNK2_chr1_215077737_215242090	0/0	t0065	2599	1	0	0	0	0	1	copy fasta	KCNK2	chr1	215077737	215242090
KCNK2_chr1_215077737_215242090	0/0	t0066	2603	1	1	0	0	0	0	copy fasta	KCNK2	chr1	215077737	215242090
KCNK2_chr1_215077737_215242090	0/0	t0067	2599	1	1	0	0	0	0	copy fasta	KCNK2	chr1	215077737	215242090
KCNK2_chr1_215077737_215242090	0/0	t0068	2595	1	1	0	0	0	0	copy fasta	KCNK2	chr1	215077737	215242090
KCNK2_chr1_215077737_215242090	0/0	t0069	2606	1	1	0	0	0	0	copy fasta	KCNK2	chr1	215077737	215242090
KCNK2_chr1_215077737_215242090	0/0	t0070	2576	1	0	0	1	0	0	copy fasta	KCNK2	chr1	215077737	215242090
KCNK2_chr1_215077737_215242090	0/0	t0071	2580	1	0	0	1	0	0	copy fasta	KCNK2	chr1	215077737	215242090
KCNK2_chr1_215077737_215242090	0/0	t0072	2590	1	1	0	0	0	0	copy fasta	KCNK2	chr1	215077737	215242090
KCNK2_chr1_215077737_215242090	0/0	t0073	2605	1	0	0	1	0	0	copy fasta	KCNK2	chr1	215077737	215242090
KCNK2_chr1_215077737_215242090	0/0	t0074	2603	1	0	0	0	0	1	copy fasta	KCNK2	chr1	215077737	215242090
KCNK2_chr1_215077737_215242090	0/0	t0075	2592	1	0	1	0	0	0	copy fasta	KCNK2	chr1	215077737	215242090
KCNK2_chr1_215077737_215242090	0/0	t0076	2601	1	0	0	1	0	0	copy fasta	KCNK2	chr1	215077737	215242090
KCNK2_chr1_215077737_215242090	0/0	t0077	2609	1	0	0	0	0	1	copy fasta	KCNK2	chr1	215077737	215242090
KCNK3_chr2_26687722_26738420	0/0	t0001	5008	90	29	7	41	6	7	copy fasta	KCNK3	chr2	26687722	26738420
KCNK3_chr2_26687722_26738420	0/0	t0002	5009	56	5	22	18	5	6	copy fasta	KCNK3	chr2	26687722	26738420
KCNK3_chr2_26687722_26738420	0/0	t0003	5008	36	2	5	25	1	3	copy fasta	KCNK3	chr2	26687722	26738420
KCNK3_chr2_26687722_26738420	0/1	t0004	5008	23	4	11	3	1	3	copy fasta	KCNK3	chr2	26687722	26738420
KCNK3_chr2_26687722_26738420	0/0	t0005	5009	18	1	3	8	3	3	copy fasta	KCNK3	chr2	26687722	26738420
KCNK3_chr2_26687722_26738420	0/0	t0006	5008	18	1	5	4	0	8	copy fasta	KCNK3	chr2	26687722	26738420
KCNK3_chr2_26687722_26738420	1/0	t0007	5007	12	8	3	0	0	0	copy fasta	KCNK3	chr2	26687722	26738420
KCNK3_chr2_26687722_26738420	0/0	t0008	5008	11	8	3	0	0	0	copy fasta	KCNK3	chr2	26687722	26738420