Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ANTXR2_chr4_79896146_80078229	0/0	t0033	6949	2	0	0	0	0	2	copy fasta	ANTXR2	chr4	79896146	80078229
ANTXR2_chr4_79896146_80078229	0/0	t0034	6952	2	2	0	0	0	0	copy fasta	ANTXR2	chr4	79896146	80078229
ANTXR2_chr4_79896146_80078229	0/0	t0035	6952	1	1	0	0	0	0	copy fasta	ANTXR2	chr4	79896146	80078229
ANTXR2_chr4_79896146_80078229	0/0	t0036	6953	1	0	0	0	0	1	copy fasta	ANTXR2	chr4	79896146	80078229
ANTXR2_chr4_79896146_80078229	0/0	t0037	6955	1	0	0	0	0	1	copy fasta	ANTXR2	chr4	79896146	80078229
ANTXR2_chr4_79896146_80078229	0/0	t0038	6950	1	0	0	1	0	0	copy fasta	ANTXR2	chr4	79896146	80078229
ANTXR2_chr4_79896146_80078229	0/0	t0039	6950	1	0	0	0	0	1	copy fasta	ANTXR2	chr4	79896146	80078229
ANTXR2_chr4_79896146_80078229	0/0	t0040	6950	1	0	1	0	0	0	copy fasta	ANTXR2	chr4	79896146	80078229
ANTXR2_chr4_79896146_80078229	0/0	t0041	6952	1	1	0	0	0	0	copy fasta	ANTXR2	chr4	79896146	80078229
ANTXR2_chr4_79896146_80078229	0/0	t0042	6950	1	0	0	1	0	0	copy fasta	ANTXR2	chr4	79896146	80078229
ANTXR2_chr4_79896146_80078229	0/0	t0043	6952	1	1	0	0	0	0	copy fasta	ANTXR2	chr4	79896146	80078229
ANTXR2_chr4_79896146_80078229	0/0	t0044	6950	1	1	0	0	0	0	copy fasta	ANTXR2	chr4	79896146	80078229
ANTXR2_chr4_79896146_80078229	0/0	t0045	6953	1	1	0	0	0	0	copy fasta	ANTXR2	chr4	79896146	80078229
ANTXR2_chr4_79896146_80078229	0/0	t0046	6950	1	0	0	1	0	0	copy fasta	ANTXR2	chr4	79896146	80078229
ANTXR2_chr4_79896146_80078229	0/0	t0047	6950	1	1	0	0	0	0	copy fasta	ANTXR2	chr4	79896146	80078229
ANTXR2_chr4_79896146_80078229	0/0	t0048	6953	1	1	0	0	0	0	copy fasta	ANTXR2	chr4	79896146	80078229
ANTXR2_chr4_79896146_80078229	0/0	t0049	6952	1	1	0	0	0	0	copy fasta	ANTXR2	chr4	79896146	80078229
ANTXR2_chr4_79896146_80078229	0/0	t0050	6954	1	0	0	1	0	0	copy fasta	ANTXR2	chr4	79896146	80078229
ANTXR2_chr4_79896146_80078229	0/0	t0051	6950	1	1	0	0	0	0	copy fasta	ANTXR2	chr4	79896146	80078229
ANTXR2_chr4_79896146_80078229	0/0	t0052	6954	1	0	0	0	0	1	copy fasta	ANTXR2	chr4	79896146	80078229
ANTXR2_chr4_79896146_80078229	0/0	t0053	6953	1	1	0	0	0	0	copy fasta	ANTXR2	chr4	79896146	80078229
ANTXR2_chr4_79896146_80078229	0/0	t0054	6953	1	1	0	0	0	0	copy fasta	ANTXR2	chr4	79896146	80078229
ANTXR2_chr4_79896146_80078229	0/0	t0055	6950	1	0	0	1	0	0	copy fasta	ANTXR2	chr4	79896146	80078229
ANTXR2_chr4_79896146_80078229	0/0	t0056	6949	1	0	0	0	0	1	copy fasta	ANTXR2	chr4	79896146	80078229
ANTXR2_chr4_79896146_80078229	0/0	t0057	6950	1	0	0	1	0	0	copy fasta	ANTXR2	chr4	79896146	80078229
ANTXR2_chr4_79896146_80078229	0/0	t0058	6953	1	1	0	0	0	0	copy fasta	ANTXR2	chr4	79896146	80078229
ANTXR2_chr4_79896146_80078229	0/0	t0059	6952	1	1	0	0	0	0	copy fasta	ANTXR2	chr4	79896146	80078229
ANTXR2_chr4_79896146_80078229	0/0	t0060	6952	1	0	0	1	0	0	copy fasta	ANTXR2	chr4	79896146	80078229
ANTXR2_chr4_79896146_80078229	0/0	t0061	6952	1	0	0	0	1	0	copy fasta	ANTXR2	chr4	79896146	80078229
ANTXR2_chr4_79896146_80078229	0/0	t0062	6952	1	1	0	0	0	0	copy fasta	ANTXR2	chr4	79896146	80078229
ANTXR2_chr4_79896146_80078229	0/0	t0063	6949	1	0	0	1	0	0	copy fasta	ANTXR2	chr4	79896146	80078229
ANTXR2_chr4_79896146_80078229	0/0	t0064	6952	1	0	0	1	0	0	copy fasta	ANTXR2	chr4	79896146	80078229
ANTXR2_chr4_79896146_80078229	0/0	t0065	6951	1	0	1	0	0	0	copy fasta	ANTXR2	chr4	79896146	80078229
ANTXR2_chr4_79896146_80078229	0/0	t0066	6948	1	0	0	1	0	0	copy fasta	ANTXR2	chr4	79896146	80078229
ANTXR2_chr4_79896146_80078229	0/0	t0067	6948	1	0	0	1	0	0	copy fasta	ANTXR2	chr4	79896146	80078229
ANTXR2_chr4_79896146_80078229	0/0	t0068	6948	1	0	0	1	0	0	copy fasta	ANTXR2	chr4	79896146	80078229
ANTXR2_chr4_79896146_80078229	0/0	t0069	6953	1	1	0	0	0	0	copy fasta	ANTXR2	chr4	79896146	80078229
ANTXR2_chr4_79896146_80078229	0/0	t0070	6950	1	1	0	0	0	0	copy fasta	ANTXR2	chr4	79896146	80078229
ANTXR2_chr4_79896146_80078229	0/0	t0071	6953	1	1	0	0	0	0	copy fasta	ANTXR2	chr4	79896146	80078229
ANTXR2_chr4_79896146_80078229	0/0	t0072	6954	1	0	0	0	0	1	copy fasta	ANTXR2	chr4	79896146	80078229
ANTXR2_chr4_79896146_80078229	0/0	t0073	6950	1	1	0	0	0	0	copy fasta	ANTXR2	chr4	79896146	80078229
ANTXR2_chr4_79896146_80078229	0/0	t0074	6953	1	1	0	0	0	0	copy fasta	ANTXR2	chr4	79896146	80078229
ANTXR2_chr4_79896146_80078229	0/0	t0075	6954	1	0	1	0	0	0	copy fasta	ANTXR2	chr4	79896146	80078229
ANTXR2_chr4_79896146_80078229	0/0	t0076	6953	1	0	0	0	0	1	copy fasta	ANTXR2	chr4	79896146	80078229
ANTXR2_chr4_79896146_80078229	0/0	t0077	6952	1	1	0	0	0	0	copy fasta	ANTXR2	chr4	79896146	80078229
ANTXR2_chr4_79896146_80078229	0/0	t0078	6953	1	1	0	0	0	0	copy fasta	ANTXR2	chr4	79896146	80078229
ANTXR2_chr4_79896146_80078229	0/0	t0079	6950	1	0	0	1	0	0	copy fasta	ANTXR2	chr4	79896146	80078229
ANTXR2_chr4_79896146_80078229	0/0	t0080	6952	1	0	0	0	0	1	copy fasta	ANTXR2	chr4	79896146	80078229
ANTXR2_chr4_79896146_80078229	0/0	t0081	6950	1	0	0	0	0	1	copy fasta	ANTXR2	chr4	79896146	80078229
ANTXR2_chr4_79896146_80078229	0/0	t0082	6954	1	0	0	1	0	0	copy fasta	ANTXR2	chr4	79896146	80078229