JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
KCNK3_chr2_26687722_26738420	0/0	t0009	5008	7	7	0	0	0	0	copy fasta	KCNK3	chr2	26687722	26738420
KCNK3_chr2_26687722_26738420	0/0	t0010	5003	6	0	0	6	0	0	copy fasta	KCNK3	chr2	26687722	26738420
KCNK3_chr2_26687722_26738420	0/0	t0011	5009	4	3	1	0	0	0	copy fasta	KCNK3	chr2	26687722	26738420
KCNK3_chr2_26687722_26738420	0/0	t0012	5007	4	0	0	4	0	0	copy fasta	KCNK3	chr2	26687722	26738420
KCNK3_chr2_26687722_26738420	0/0	t0013	5008	3	3	0	0	0	0	copy fasta	KCNK3	chr2	26687722	26738420
KCNK3_chr2_26687722_26738420	0/0	t0014	5007	3	3	0	0	0	0	copy fasta	KCNK3	chr2	26687722	26738420
KCNK3_chr2_26687722_26738420	0/0	t0015	5008	3	0	1	2	0	0	copy fasta	KCNK3	chr2	26687722	26738420
KCNK3_chr2_26687722_26738420	0/0	t0016	5008	2	0	2	0	0	0	copy fasta	KCNK3	chr2	26687722	26738420
KCNK3_chr2_26687722_26738420	0/0	t0017	5009	2	1	0	1	0	0	copy fasta	KCNK3	chr2	26687722	26738420
KCNK3_chr2_26687722_26738420	0/0	t0018	5008	2	2	0	0	0	0	copy fasta	KCNK3	chr2	26687722	26738420
KCNK3_chr2_26687722_26738420	0/0	t0019	5008	2	0	2	0	0	0	copy fasta	KCNK3	chr2	26687722	26738420
KCNK3_chr2_26687722_26738420	0/0	t0020	5007	2	0	0	2	0	0	copy fasta	KCNK3	chr2	26687722	26738420
KCNK3_chr2_26687722_26738420	0/0	t0021	5008	2	0	0	2	0	0	copy fasta	KCNK3	chr2	26687722	26738420
KCNK3_chr2_26687722_26738420	0/0	t0022	5003	2	0	0	2	0	0	copy fasta	KCNK3	chr2	26687722	26738420
KCNK3_chr2_26687722_26738420	0/0	t0023	5008	1	1	0	0	0	0	copy fasta	KCNK3	chr2	26687722	26738420
KCNK3_chr2_26687722_26738420	0/0	t0024	5008	1	0	0	1	0	0	copy fasta	KCNK3	chr2	26687722	26738420
KCNK3_chr2_26687722_26738420	0/0	t0025	5009	1	0	0	0	0	1	copy fasta	KCNK3	chr2	26687722	26738420
KCNK3_chr2_26687722_26738420	0/0	t0026	5004	1	0	0	1	0	0	copy fasta	KCNK3	chr2	26687722	26738420
KCNK3_chr2_26687722_26738420	0/0	t0027	5008	1	1	0	0	0	0	copy fasta	KCNK3	chr2	26687722	26738420
KCNK3_chr2_26687722_26738420	0/0	t0028	5008	1	0	1	0	0	0	copy fasta	KCNK3	chr2	26687722	26738420
KCNK3_chr2_26687722_26738420	0/0	t0029	5008	1	0	0	1	0	0	copy fasta	KCNK3	chr2	26687722	26738420
KCNK3_chr2_26687722_26738420	0/0	t0030	5008	1	0	1	0	0	0	copy fasta	KCNK3	chr2	26687722	26738420
KCNK3_chr2_26687722_26738420	0/0	t0031	5008	1	1	0	0	0	0	copy fasta	KCNK3	chr2	26687722	26738420
KCNK3_chr2_26687722_26738420	0/0	t0032	5008	1	1	0	0	0	0	copy fasta	KCNK3	chr2	26687722	26738420
KCNK3_chr2_26687722_26738420	0/0	t0033	5008	1	1	0	0	0	0	copy fasta	KCNK3	chr2	26687722	26738420
KCNK3_chr2_26687722_26738420	0/0	t0034	5008	1	0	0	1	0	0	copy fasta	KCNK3	chr2	26687722	26738420
KCNK3_chr2_26687722_26738420	0/0	t0035	5008	1	0	0	1	0	0	copy fasta	KCNK3	chr2	26687722	26738420
KCNK3_chr2_26687722_26738420	0/0	t0036	5008	1	0	0	0	0	1	copy fasta	KCNK3	chr2	26687722	26738420
KCNK3_chr2_26687722_26738420	0/0	t0037	5007	1	0	1	0	0	0	copy fasta	KCNK3	chr2	26687722	26738420
KCNK3_chr2_26687722_26738420	0/0	t0038	5008	1	0	0	1	0	0	copy fasta	KCNK3	chr2	26687722	26738420
KCNK3_chr2_26687722_26738420	0/0	t0039	5009	1	0	0	1	0	0	copy fasta	KCNK3	chr2	26687722	26738420
KCNK3_chr2_26687722_26738420	0/0	t0040	5008	1	1	0	0	0	0	copy fasta	KCNK3	chr2	26687722	26738420
KCNK3_chr2_26687722_26738420	0/0	t0041	5007	1	1	0	0	0	0	copy fasta	KCNK3	chr2	26687722	26738420
KCNK3_chr2_26687722_26738420	0/0	t0042	5009	1	0	0	1	0	0	copy fasta	KCNK3	chr2	26687722	26738420
KCNK3_chr2_26687722_26738420	0/0	t0043	5009	1	0	1	0	0	0	copy fasta	KCNK3	chr2	26687722	26738420
KCNK3_chr2_26687722_26738420	0/0	t0044	5008	1	1	0	0	0	0	copy fasta	KCNK3	chr2	26687722	26738420
KCNK3_chr2_26687722_26738420	0/0	t0045	5008	1	0	1	0	0	0	copy fasta	KCNK3	chr2	26687722	26738420
KCNK3_chr2_26687722_26738420	0/0	t0046	5008	1	1	0	0	0	0	copy fasta	KCNK3	chr2	26687722	26738420
KCNK3_chr2_26687722_26738420	0/0	t0047	5008	1	1	0	0	0	0	copy fasta	KCNK3	chr2	26687722	26738420
KCNK3_chr2_26687722_26738420	0/0	t0048	5008	1	1	0	0	0	0	copy fasta	KCNK3	chr2	26687722	26738420
KCNK3_chr2_26687722_26738420	0/0	t0049	5009	1	1	0	0	0	0	copy fasta	KCNK3	chr2	26687722	26738420
KCNK3_chr2_26687722_26738420	0/0	t0050	5007	1	1	0	0	0	0	copy fasta	KCNK3	chr2	26687722	26738420
KCNK4_chr11_64286302_64305031	0/1	t0001	648	329	46	73	159	16	34	copy fasta	KCNK4	chr11	64286302	64305031
KCNK4_chr11_64286302_64305031	1/0	t0002	648	75	50	2	16	0	6	copy fasta	KCNK4	chr11	64286302	64305031
KCNK4_chr11_64286302_64305031	0/0	t0003	648	1	0	0	1	0	0	copy fasta	KCNK4	chr11	64286302	64305031
KCNK4_chr11_64286302_64305031	0/0	t0004	648	1	0	1	0	0	0	copy fasta	KCNK4	chr11	64286302	64305031
KCNK5_chr6_39183971_39234475	1/0	t0001	2284	148	36	32	46	6	27	copy fasta	KCNK5	chr6	39183971	39234475
KCNK5_chr6_39183971_39234475	0/1	t0002	2284	125	18	36	54	8	8	copy fasta	KCNK5	chr6	39183971	39234475
KCNK5_chr6_39183971_39234475	0/0	t0003	2284	80	2	6	66	0	6	copy fasta	KCNK5	chr6	39183971	39234475
KCNK5_chr6_39183971_39234475	0/0	t0004	2284	14	1	1	7	2	3	copy fasta	KCNK5	chr6	39183971	39234475