JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
KCNK5_chr6_39183971_39234475	0/0	t0005	2284	11	10	1	0	0	0	copy fasta	KCNK5	chr6	39183971	39234475
KCNK5_chr6_39183971_39234475	0/0	t0006	2284	8	7	1	0	0	0	copy fasta	KCNK5	chr6	39183971	39234475
KCNK5_chr6_39183971_39234475	0/0	t0007	2284	3	0	0	3	0	0	copy fasta	KCNK5	chr6	39183971	39234475
KCNK5_chr6_39183971_39234475	0/0	t0008	2284	3	0	2	1	0	0	copy fasta	KCNK5	chr6	39183971	39234475
KCNK5_chr6_39183971_39234475	0/0	t0009	2284	3	3	0	0	0	0	copy fasta	KCNK5	chr6	39183971	39234475
KCNK5_chr6_39183971_39234475	0/0	t0010	2284	3	3	0	0	0	0	copy fasta	KCNK5	chr6	39183971	39234475
KCNK5_chr6_39183971_39234475	0/0	t0011	2284	3	3	0	0	0	0	copy fasta	KCNK5	chr6	39183971	39234475
KCNK5_chr6_39183971_39234475	0/0	t0012	2284	2	2	0	0	0	0	copy fasta	KCNK5	chr6	39183971	39234475
KCNK5_chr6_39183971_39234475	0/0	t0013	2284	2	0	0	2	0	0	copy fasta	KCNK5	chr6	39183971	39234475
KCNK5_chr6_39183971_39234475	0/0	t0014	2284	2	2	0	0	0	0	copy fasta	KCNK5	chr6	39183971	39234475
KCNK5_chr6_39183971_39234475	0/0	t0015	2284	1	0	0	1	0	0	copy fasta	KCNK5	chr6	39183971	39234475
KCNK5_chr6_39183971_39234475	0/0	t0016	2284	1	1	0	0	0	0	copy fasta	KCNK5	chr6	39183971	39234475
KCNK5_chr6_39183971_39234475	0/0	t0017	2284	1	1	0	0	0	0	copy fasta	KCNK5	chr6	39183971	39234475
KCNK5_chr6_39183971_39234475	0/0	t0018	2284	1	1	0	0	0	0	copy fasta	KCNK5	chr6	39183971	39234475
KCNK5_chr6_39183971_39234475	0/0	t0019	2284	1	1	0	0	0	0	copy fasta	KCNK5	chr6	39183971	39234475
KCNK5_chr6_39183971_39234475	0/0	t0020	2284	1	0	1	0	0	0	copy fasta	KCNK5	chr6	39183971	39234475
KCNK5_chr6_39183971_39234475	0/0	t0021	2284	1	0	0	1	0	0	copy fasta	KCNK5	chr6	39183971	39234475
KCNK5_chr6_39183971_39234475	0/0	t0022	2284	1	0	0	1	0	0	copy fasta	KCNK5	chr6	39183971	39234475
KCNK5_chr6_39183971_39234475	0/0	t0023	2284	1	0	0	0	0	1	copy fasta	KCNK5	chr6	39183971	39234475
KCNK5_chr6_39183971_39234475	0/0	t0024	2284	1	0	0	1	0	0	copy fasta	KCNK5	chr6	39183971	39234475
KCNK5_chr6_39183971_39234475	0/0	t0025	2284	1	1	0	0	0	0	copy fasta	KCNK5	chr6	39183971	39234475
KCNK5_chr6_39183971_39234475	0/0	t0026	2284	1	0	0	0	0	1	copy fasta	KCNK5	chr6	39183971	39234475
KCNK5_chr6_39183971_39234475	0/0	t0027	2284	1	1	0	0	0	0	copy fasta	KCNK5	chr6	39183971	39234475
KCNK5_chr6_39183971_39234475	0/0	t0028	2284	1	0	0	1	0	0	copy fasta	KCNK5	chr6	39183971	39234475
KCNK5_chr6_39183971_39234475	0/0	t0029	2284	1	1	0	0	0	0	copy fasta	KCNK5	chr6	39183971	39234475
KCNK5_chr6_39183971_39234475	0/0	t0030	2284	1	1	0	0	0	0	copy fasta	KCNK5	chr6	39183971	39234475
KCNK5_chr6_39183971_39234475	0/0	t0031	2284	1	1	0	0	0	0	copy fasta	KCNK5	chr6	39183971	39234475
KCNK6_chr19_38314845_38337076	1/1	t0001	4780	153	40	31	54	11	15	copy fasta	KCNK6	chr19	38314845	38337076
KCNK6_chr19_38314845_38337076	0/0	t0002	4764	62	3	10	41	1	7	copy fasta	KCNK6	chr19	38314845	38337076
KCNK6_chr19_38314845_38337076	0/0	t0003	4783	29	7	6	16	0	0	copy fasta	KCNK6	chr19	38314845	38337076
KCNK6_chr19_38314845_38337076	0/0	t0004	4788	17	0	0	17	0	0	copy fasta	KCNK6	chr19	38314845	38337076
KCNK6_chr19_38314845_38337076	0/0	t0005	4782	7	0	1	6	0	0	copy fasta	KCNK6	chr19	38314845	38337076
KCNK6_chr19_38314845_38337076	0/0	t0006	4835	7	0	2	1	0	4	copy fasta	KCNK6	chr19	38314845	38337076
KCNK6_chr19_38314845_38337076	0/0	t0007	4831	6	0	0	4	0	2	copy fasta	KCNK6	chr19	38314845	38337076
KCNK6_chr19_38314845_38337076	0/0	t0008	4827	6	0	2	2	1	1	copy fasta	KCNK6	chr19	38314845	38337076
KCNK6_chr19_38314845_38337076	0/0	t0009	4815	6	0	1	4	0	1	copy fasta	KCNK6	chr19	38314845	38337076
KCNK6_chr19_38314845_38337076	0/0	t0010	4784	5	3	0	2	0	0	copy fasta	KCNK6	chr19	38314845	38337076
KCNK6_chr19_38314845_38337076	0/0	t0011	4823	5	0	2	3	0	0	copy fasta	KCNK6	chr19	38314845	38337076
KCNK6_chr19_38314845_38337076	0/0	t0012	4788	4	4	0	0	0	0	copy fasta	KCNK6	chr19	38314845	38337076
KCNK6_chr19_38314845_38337076	0/0	t0013	4774	4	3	1	0	0	0	copy fasta	KCNK6	chr19	38314845	38337076
KCNK6_chr19_38314845_38337076	0/0	t0014	4819	4	0	0	4	0	0	copy fasta	KCNK6	chr19	38314845	38337076
KCNK6_chr19_38314845_38337076	0/0	t0015	4780	3	0	0	3	0	0	copy fasta	KCNK6	chr19	38314845	38337076
KCNK6_chr19_38314845_38337076	0/0	t0016	4780	3	0	3	0	0	0	copy fasta	KCNK6	chr19	38314845	38337076
KCNK6_chr19_38314845_38337076	0/0	t0017	4839	3	0	1	0	0	2	copy fasta	KCNK6	chr19	38314845	38337076
KCNK6_chr19_38314845_38337076	0/0	t0018	4819	3	0	0	3	0	0	copy fasta	KCNK6	chr19	38314845	38337076
KCNK6_chr19_38314845_38337076	0/0	t0019	4839	3	0	3	0	0	0	copy fasta	KCNK6	chr19	38314845	38337076
KCNK6_chr19_38314845_38337076	0/0	t0020	4831	3	0	3	0	0	0	copy fasta	KCNK6	chr19	38314845	38337076
KCNK6_chr19_38314845_38337076	0/0	t0021	4754	2	2	0	0	0	0	copy fasta	KCNK6	chr19	38314845	38337076
KCNK6_chr19_38314845_38337076	0/0	t0022	4781	2	0	0	0	1	1	copy fasta	KCNK6	chr19	38314845	38337076
KCNK6_chr19_38314845_38337076	0/0	t0023	4788	2	0	0	1	0	1	copy fasta	KCNK6	chr19	38314845	38337076