JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
KCNK6_chr19_38314845_38337076	0/0	t0024	4775	2	0	0	2	0	0	copy fasta	KCNK6	chr19	38314845	38337076
KCNK6_chr19_38314845_38337076	0/0	t0025	4779	2	2	0	0	0	0	copy fasta	KCNK6	chr19	38314845	38337076
KCNK6_chr19_38314845_38337076	0/0	t0026	4843	2	0	0	0	0	2	copy fasta	KCNK6	chr19	38314845	38337076
KCNK6_chr19_38314845_38337076	0/0	t0027	4840	2	1	1	0	0	0	copy fasta	KCNK6	chr19	38314845	38337076
KCNK6_chr19_38314845_38337076	0/0	t0028	4832	2	0	0	2	0	0	copy fasta	KCNK6	chr19	38314845	38337076
KCNK6_chr19_38314845_38337076	0/0	t0029	4827	1	1	0	0	0	0	copy fasta	KCNK6	chr19	38314845	38337076
KCNK6_chr19_38314845_38337076	0/0	t0030	4764	1	1	0	0	0	0	copy fasta	KCNK6	chr19	38314845	38337076
KCNK6_chr19_38314845_38337076	0/0	t0031	4779	1	1	0	0	0	0	copy fasta	KCNK6	chr19	38314845	38337076
KCNK6_chr19_38314845_38337076	0/0	t0032	4783	1	1	0	0	0	0	copy fasta	KCNK6	chr19	38314845	38337076
KCNK6_chr19_38314845_38337076	0/0	t0033	4783	1	0	0	1	0	0	copy fasta	KCNK6	chr19	38314845	38337076
KCNK6_chr19_38314845_38337076	0/0	t0034	4788	1	1	0	0	0	0	copy fasta	KCNK6	chr19	38314845	38337076
KCNK6_chr19_38314845_38337076	0/0	t0035	4780	1	0	0	1	0	0	copy fasta	KCNK6	chr19	38314845	38337076
KCNK6_chr19_38314845_38337076	0/0	t0036	4780	1	0	0	0	1	0	copy fasta	KCNK6	chr19	38314845	38337076
KCNK6_chr19_38314845_38337076	0/0	t0037	4781	1	0	0	1	0	0	copy fasta	KCNK6	chr19	38314845	38337076
KCNK6_chr19_38314845_38337076	0/0	t0038	4788	1	1	0	0	0	0	copy fasta	KCNK6	chr19	38314845	38337076
KCNK6_chr19_38314845_38337076	0/0	t0039	4780	1	0	1	0	0	0	copy fasta	KCNK6	chr19	38314845	38337076
KCNK6_chr19_38314845_38337076	0/0	t0040	4780	1	1	0	0	0	0	copy fasta	KCNK6	chr19	38314845	38337076
KCNK6_chr19_38314845_38337076	0/0	t0041	4780	1	1	0	0	0	0	copy fasta	KCNK6	chr19	38314845	38337076
KCNK6_chr19_38314845_38337076	0/0	t0042	4780	1	0	0	0	1	0	copy fasta	KCNK6	chr19	38314845	38337076
KCNK6_chr19_38314845_38337076	0/0	t0043	4780	1	0	0	0	0	1	copy fasta	KCNK6	chr19	38314845	38337076
KCNK6_chr19_38314845_38337076	0/0	t0044	4779	1	1	0	0	0	0	copy fasta	KCNK6	chr19	38314845	38337076
KCNK6_chr19_38314845_38337076	0/0	t0045	4780	1	0	0	1	0	0	copy fasta	KCNK6	chr19	38314845	38337076
KCNK6_chr19_38314845_38337076	0/0	t0046	4779	1	0	0	1	0	0	copy fasta	KCNK6	chr19	38314845	38337076
KCNK6_chr19_38314845_38337076	0/0	t0047	4773	1	1	0	0	0	0	copy fasta	KCNK6	chr19	38314845	38337076
KCNK6_chr19_38314845_38337076	0/0	t0048	4778	1	0	1	0	0	0	copy fasta	KCNK6	chr19	38314845	38337076
KCNK6_chr19_38314845_38337076	0/0	t0049	4783	1	1	0	0	0	0	copy fasta	KCNK6	chr19	38314845	38337076
KCNK6_chr19_38314845_38337076	0/0	t0050	4764	1	0	1	0	0	0	copy fasta	KCNK6	chr19	38314845	38337076
KCNK6_chr19_38314845_38337076	0/0	t0051	4824	1	0	0	0	0	1	copy fasta	KCNK6	chr19	38314845	38337076
KCNK6_chr19_38314845_38337076	0/0	t0052	4871	1	0	0	0	0	1	copy fasta	KCNK6	chr19	38314845	38337076
KCNK6_chr19_38314845_38337076	0/0	t0053	4843	1	0	1	0	0	0	copy fasta	KCNK6	chr19	38314845	38337076
KCNK6_chr19_38314845_38337076	0/0	t0054	4838	1	0	1	0	0	0	copy fasta	KCNK6	chr19	38314845	38337076
KCNK6_chr19_38314845_38337076	0/0	t0055	4832	1	0	0	0	0	1	copy fasta	KCNK6	chr19	38314845	38337076
KCNK6_chr19_38314845_38337076	0/0	t0056	4830	1	0	1	0	0	0	copy fasta	KCNK6	chr19	38314845	38337076
KCNK6_chr19_38314845_38337076	0/0	t0057	4829	1	0	0	1	0	0	copy fasta	KCNK6	chr19	38314845	38337076
KCNK6_chr19_38314845_38337076	0/0	t0058	4827	1	0	0	1	0	0	copy fasta	KCNK6	chr19	38314845	38337076
KCNK6_chr19_38314845_38337076	0/0	t0059	4824	1	0	1	0	0	0	copy fasta	KCNK6	chr19	38314845	38337076
KCNK6_chr19_38314845_38337076	0/0	t0060	4823	1	0	0	1	0	0	copy fasta	KCNK6	chr19	38314845	38337076
KCNK6_chr19_38314845_38337076	0/0	t0061	4822	1	0	0	1	0	0	copy fasta	KCNK6	chr19	38314845	38337076
KCNK6_chr19_38314845_38337076	0/0	t0062	4823	1	0	0	1	0	0	copy fasta	KCNK6	chr19	38314845	38337076
KCNK6_chr19_38314845_38337076	0/0	t0063	4818	1	0	0	1	0	0	copy fasta	KCNK6	chr19	38314845	38337076
KCNK6_chr19_38314845_38337076	0/0	t0064	4816	1	0	0	1	0	0	copy fasta	KCNK6	chr19	38314845	38337076
KCNK6_chr19_38314845_38337076	0/0	t0065	4815	1	0	0	1	0	0	copy fasta	KCNK6	chr19	38314845	38337076
KCNK6_chr19_38314845_38337076	0/0	t0066	4837	1	0	0	0	0	1	copy fasta	KCNK6	chr19	38314845	38337076
KCNK6_chr19_38314845_38337076	0/0	t0067	4825	1	0	0	1	0	0	copy fasta	KCNK6	chr19	38314845	38337076
KCNK6_chr19_38314845_38337076	0/0	t0068	4823	1	0	0	1	0	0	copy fasta	KCNK6	chr19	38314845	38337076
KCNK6_chr19_38314845_38337076	0/0	t0069	4842	1	0	1	0	0	0	copy fasta	KCNK6	chr19	38314845	38337076
KCNK6_chr19_38314845_38337076	0/0	t0070	4833	1	0	1	0	0	0	copy fasta	KCNK6	chr19	38314845	38337076
KCNK6_chr19_38314845_38337076	0/0	t0071	4827	1	0	0	1	0	0	copy fasta	KCNK6	chr19	38314845	38337076
KCNK6_chr19_38314845_38337076	0/0	t0072	4826	1	0	1	0	0	0	copy fasta	KCNK6	chr19	38314845	38337076
KCNK6_chr19_38314845_38337076	0/0	t0073	4825	1	0	0	0	0	1	copy fasta	KCNK6	chr19	38314845	38337076