JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
KCNK6_chr19_38314845_38337076	0/0	t0074	4821	1	1	0	0	0	0	copy fasta	KCNK6	chr19	38314845	38337076
KCNK6_chr19_38314845_38337076	0/0	t0075	4840	1	1	0	0	0	0	copy fasta	KCNK6	chr19	38314845	38337076
KCNK6_chr19_38314845_38337076	0/0	t0076	4836	1	0	1	0	0	0	copy fasta	KCNK6	chr19	38314845	38337076
KCNK6_chr19_38314845_38337076	0/0	t0077	4835	1	0	0	1	0	0	copy fasta	KCNK6	chr19	38314845	38337076
KCNK7_chr11_65587836_65600800	0/1	t0001	198	416	93	72	184	18	48	copy fasta	KCNK7	chr11	65587836	65600800
KCNK7_chr11_65587836_65600800	1/0	t0002	198	3	2	0	0	0	0	copy fasta	KCNK7	chr11	65587836	65600800
KCNK7_chr11_65587836_65600800	0/0	t0003	193	3	3	0	0	0	0	copy fasta	KCNK7	chr11	65587836	65600800
KCNK7_chr11_65587836_65600800	0/0	t0004	198	1	1	0	0	0	0	copy fasta	KCNK7	chr11	65587836	65600800
KCNK7_chr11_65587836_65600800	0/0	t0005	198	1	1	0	0	0	0	copy fasta	KCNK7	chr11	65587836	65600800
KCNK9_chr8_139612121_139708123	1/1	t0001	1269	303	74	62	127	4	34	copy fasta	KCNK9	chr8	139612121	139708123
KCNK9_chr8_139612121_139708123	0/0	t0002	1269	6	0	0	6	0	0	copy fasta	KCNK9	chr8	139612121	139708123
KCNK9_chr8_139612121_139708123	0/0	t0003	1269	3	3	0	0	0	0	copy fasta	KCNK9	chr8	139612121	139708123
KCNK9_chr8_139612121_139708123	0/0	t0004	1269	3	3	0	0	0	0	copy fasta	KCNK9	chr8	139612121	139708123
KCNK9_chr8_139612121_139708123	0/0	t0005	1269	2	2	0	0	0	0	copy fasta	KCNK9	chr8	139612121	139708123
KCNK9_chr8_139612121_139708123	0/0	t0006	1269	1	1	0	0	0	0	copy fasta	KCNK9	chr8	139612121	139708123
KCNK9_chr8_139612121_139708123	0/0	t0007	1269	1	0	0	1	0	0	copy fasta	KCNK9	chr8	139612121	139708123
KCNK9_chr8_139612121_139708123	0/0	t0008	1269	1	1	0	0	0	0	copy fasta	KCNK9	chr8	139612121	139708123
KCNK9_chr8_139612121_139708123	0/0	t0009	1269	1	1	0	0	0	0	copy fasta	KCNK9	chr8	139612121	139708123
KCNK9_chr8_139612121_139708123	0/0	t0010	1269	1	1	0	0	0	0	copy fasta	KCNK9	chr8	139612121	139708123
KCNMA1_chr10_76879882_77642808	0/0	t0001	2551	30	22	5	2	1	0	copy fasta	KCNMA1	chr10	76879882	77642808
KCNMA1_chr10_76879882_77642808	0/0	t0002	2551	24	4	7	9	1	3	copy fasta	KCNMA1	chr10	76879882	77642808
KCNMA1_chr10_76879882_77642808	0/0	t0003	2551	23	12	4	5	1	1	copy fasta	KCNMA1	chr10	76879882	77642808
KCNMA1_chr10_76879882_77642808	0/0	t0004	2557	6	0	0	3	0	3	copy fasta	KCNMA1	chr10	76879882	77642808
KCNMA1_chr10_76879882_77642808	0/0	t0005	2551	3	2	0	0	1	0	copy fasta	KCNMA1	chr10	76879882	77642808
KCNMA1_chr10_76879882_77642808	0/0	t0006	2551	3	3	0	0	0	0	copy fasta	KCNMA1	chr10	76879882	77642808
KCNMA1_chr10_76879882_77642808	0/0	t0007	2551	3	3	0	0	0	0	copy fasta	KCNMA1	chr10	76879882	77642808
KCNMA1_chr10_76879882_77642808	0/0	t0008	2557	2	0	1	0	0	1	copy fasta	KCNMA1	chr10	76879882	77642808
KCNMA1_chr10_76879882_77642808	0/0	t0009	2585	1	1	0	0	0	0	copy fasta	KCNMA1	chr10	76879882	77642808
KCNMA1_chr10_76879882_77642808	0/0	t0010	2551	1	0	1	0	0	0	copy fasta	KCNMA1	chr10	76879882	77642808
KCNMA1_chr10_76879882_77642808	0/0	t0011	2551	1	0	1	0	0	0	copy fasta	KCNMA1	chr10	76879882	77642808
KCNMA1_chr10_76879882_77642808	0/0	t0012	2551	1	0	0	0	0	1	copy fasta	KCNMA1	chr10	76879882	77642808
KCNMA1_chr10_76879882_77642808	0/0	t0013	2551	1	0	1	0	0	0	copy fasta	KCNMA1	chr10	76879882	77642808
KCNMA1_chr10_76879882_77642808	0/0	t0014	2551	1	1	0	0	0	0	copy fasta	KCNMA1	chr10	76879882	77642808
KCNMA1_chr10_76879882_77642808	0/0	t0015	2551	1	0	0	1	0	0	copy fasta	KCNMA1	chr10	76879882	77642808
KCNMA1_chr10_76879882_77642808	0/0	t0016	2551	1	1	0	0	0	0	copy fasta	KCNMA1	chr10	76879882	77642808
KCNMA1_chr10_76879882_77642808	0/0	t0017	2551	1	1	0	0	0	0	copy fasta	KCNMA1	chr10	76879882	77642808
KCNMA1_chr10_76879882_77642808	0/0	t0018	2557	1	0	0	0	0	1	copy fasta	KCNMA1	chr10	76879882	77642808
KCNMA1_chr10_76879882_77642808	0/0	t0019	2557	1	0	0	1	0	0	copy fasta	KCNMA1	chr10	76879882	77642808
KCNMA1_chr10_76879882_77642808	0/0	t0020	2557	1	0	0	1	0	0	copy fasta	KCNMA1	chr10	76879882	77642808
KCNMB1_chr5_170369671_170394367	0/1	t0001	4167	62	15	12	20	4	10	copy fasta	KCNMB1	chr5	170369671	170394367
KCNMB1_chr5_170369671_170394367	0/0	t0002	4115	43	1	4	29	1	8	copy fasta	KCNMB1	chr5	170369671	170394367
KCNMB1_chr5_170369671_170394367	0/0	t0003	4167	43	5	14	16	2	6	copy fasta	KCNMB1	chr5	170369671	170394367
KCNMB1_chr5_170369671_170394367	1/0	t0004	4167	37	1	2	32	0	1	copy fasta	KCNMB1	chr5	170369671	170394367
KCNMB1_chr5_170369671_170394367	0/0	t0005	4168	26	0	3	18	1	4	copy fasta	KCNMB1	chr5	170369671	170394367
KCNMB1_chr5_170369671_170394367	0/0	t0006	4167	18	1	10	5	1	1	copy fasta	KCNMB1	chr5	170369671	170394367
KCNMB1_chr5_170369671_170394367	0/0	t0007	4168	15	6	3	5	0	1	copy fasta	KCNMB1	chr5	170369671	170394367
KCNMB1_chr5_170369671_170394367	0/0	t0008	4116	13	0	5	7	0	1	copy fasta	KCNMB1	chr5	170369671	170394367
KCNMB1_chr5_170369671_170394367	0/0	t0009	4168	11	2	3	2	2	2	copy fasta	KCNMB1	chr5	170369671	170394367
KCNMB1_chr5_170369671_170394367	0/0	t0010	4114	9	3	1	4	0	1	copy fasta	KCNMB1	chr5	170369671	170394367
KCNMB1_chr5_170369671_170394367	0/0	t0011	4168	8	0	2	3	1	2	copy fasta	KCNMB1	chr5	170369671	170394367