JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
KCNMB1_chr5_170369671_170394367	0/0	t0012	4168	7	0	0	6	0	1	copy fasta	KCNMB1	chr5	170369671	170394367
KCNMB1_chr5_170369671_170394367	0/0	t0013	4167	6	0	0	6	0	0	copy fasta	KCNMB1	chr5	170369671	170394367
KCNMB1_chr5_170369671_170394367	0/0	t0014	4168	5	0	2	3	0	0	copy fasta	KCNMB1	chr5	170369671	170394367
KCNMB1_chr5_170369671_170394367	0/0	t0015	4167	5	4	1	0	0	0	copy fasta	KCNMB1	chr5	170369671	170394367
KCNMB1_chr5_170369671_170394367	0/0	t0016	4166	5	5	0	0	0	0	copy fasta	KCNMB1	chr5	170369671	170394367
KCNMB1_chr5_170369671_170394367	0/0	t0017	4166	5	1	0	2	2	0	copy fasta	KCNMB1	chr5	170369671	170394367
KCNMB1_chr5_170369671_170394367	0/0	t0018	4166	5	0	2	3	0	0	copy fasta	KCNMB1	chr5	170369671	170394367
KCNMB1_chr5_170369671_170394367	0/0	t0019	4109	4	4	0	0	0	0	copy fasta	KCNMB1	chr5	170369671	170394367
KCNMB1_chr5_170369671_170394367	0/0	t0020	4167	4	4	0	0	0	0	copy fasta	KCNMB1	chr5	170369671	170394367
KCNMB1_chr5_170369671_170394367	0/0	t0021	4153	4	4	0	0	0	0	copy fasta	KCNMB1	chr5	170369671	170394367
KCNMB1_chr5_170369671_170394367	0/0	t0022	4142	4	4	0	0	0	0	copy fasta	KCNMB1	chr5	170369671	170394367
KCNMB1_chr5_170369671_170394367	0/0	t0023	4167	4	0	0	3	1	0	copy fasta	KCNMB1	chr5	170369671	170394367
KCNMB1_chr5_170369671_170394367	0/0	t0024	4169	3	0	0	3	0	0	copy fasta	KCNMB1	chr5	170369671	170394367
KCNMB1_chr5_170369671_170394367	0/0	t0025	4137	3	3	0	0	0	0	copy fasta	KCNMB1	chr5	170369671	170394367
KCNMB1_chr5_170369671_170394367	0/0	t0026	4167	3	0	0	3	0	0	copy fasta	KCNMB1	chr5	170369671	170394367
KCNMB1_chr5_170369671_170394367	0/0	t0027	4137	2	2	0	0	0	0	copy fasta	KCNMB1	chr5	170369671	170394367
KCNMB1_chr5_170369671_170394367	0/0	t0028	4115	2	0	1	0	1	0	copy fasta	KCNMB1	chr5	170369671	170394367
KCNMB1_chr5_170369671_170394367	0/0	t0029	4166	2	0	1	1	0	0	copy fasta	KCNMB1	chr5	170369671	170394367
KCNMB1_chr5_170369671_170394367	0/0	t0030	4153	2	2	0	0	0	0	copy fasta	KCNMB1	chr5	170369671	170394367
KCNMB1_chr5_170369671_170394367	0/0	t0031	4113	2	2	0	0	0	0	copy fasta	KCNMB1	chr5	170369671	170394367
KCNMB1_chr5_170369671_170394367	0/0	t0032	4116	2	0	0	2	0	0	copy fasta	KCNMB1	chr5	170369671	170394367
KCNMB1_chr5_170369671_170394367	0/0	t0033	4115	2	0	2	0	0	0	copy fasta	KCNMB1	chr5	170369671	170394367
KCNMB1_chr5_170369671_170394367	0/0	t0034	4169	2	0	1	1	0	0	copy fasta	KCNMB1	chr5	170369671	170394367
KCNMB1_chr5_170369671_170394367	0/0	t0035	4167	2	2	0	0	0	0	copy fasta	KCNMB1	chr5	170369671	170394367
KCNMB1_chr5_170369671_170394367	0/0	t0036	4137	2	2	0	0	0	0	copy fasta	KCNMB1	chr5	170369671	170394367
KCNMB1_chr5_170369671_170394367	0/0	t0037	4169	2	1	1	0	0	0	copy fasta	KCNMB1	chr5	170369671	170394367
KCNMB1_chr5_170369671_170394367	0/0	t0038	4166	2	0	0	2	0	0	copy fasta	KCNMB1	chr5	170369671	170394367
KCNMB1_chr5_170369671_170394367	0/0	t0039	4167	2	0	0	2	0	0	copy fasta	KCNMB1	chr5	170369671	170394367
KCNMB1_chr5_170369671_170394367	0/0	t0040	4167	2	2	0	0	0	0	copy fasta	KCNMB1	chr5	170369671	170394367
KCNMB1_chr5_170369671_170394367	0/0	t0041	4168	2	2	0	0	0	0	copy fasta	KCNMB1	chr5	170369671	170394367
KCNMB1_chr5_170369671_170394367	0/0	t0042	4115	2	0	0	1	0	1	copy fasta	KCNMB1	chr5	170369671	170394367
KCNMB1_chr5_170369671_170394367	0/0	t0043	4167	2	2	0	0	0	0	copy fasta	KCNMB1	chr5	170369671	170394367
KCNMB1_chr5_170369671_170394367	0/0	t0044	4116	1	1	0	0	0	0	copy fasta	KCNMB1	chr5	170369671	170394367
KCNMB1_chr5_170369671_170394367	0/0	t0045	4167	1	1	0	0	0	0	copy fasta	KCNMB1	chr5	170369671	170394367
KCNMB1_chr5_170369671_170394367	0/0	t0046	4117	1	0	1	0	0	0	copy fasta	KCNMB1	chr5	170369671	170394367
KCNMB1_chr5_170369671_170394367	0/0	t0047	4168	1	0	0	1	0	0	copy fasta	KCNMB1	chr5	170369671	170394367
KCNMB1_chr5_170369671_170394367	0/0	t0048	4168	1	0	0	1	0	0	copy fasta	KCNMB1	chr5	170369671	170394367
KCNMB1_chr5_170369671_170394367	0/0	t0049	4168	1	0	0	0	0	1	copy fasta	KCNMB1	chr5	170369671	170394367
KCNMB1_chr5_170369671_170394367	0/0	t0050	4167	1	0	0	1	0	0	copy fasta	KCNMB1	chr5	170369671	170394367
KCNMB1_chr5_170369671_170394367	0/0	t0051	4108	1	1	0	0	0	0	copy fasta	KCNMB1	chr5	170369671	170394367
KCNMB1_chr5_170369671_170394367	0/0	t0052	4114	1	1	0	0	0	0	copy fasta	KCNMB1	chr5	170369671	170394367
KCNMB1_chr5_170369671_170394367	0/0	t0053	4113	1	0	1	0	0	0	copy fasta	KCNMB1	chr5	170369671	170394367
KCNMB1_chr5_170369671_170394367	0/0	t0054	4111	1	1	0	0	0	0	copy fasta	KCNMB1	chr5	170369671	170394367
KCNMB1_chr5_170369671_170394367	0/0	t0055	4115	1	0	1	0	0	0	copy fasta	KCNMB1	chr5	170369671	170394367
KCNMB1_chr5_170369671_170394367	0/0	t0056	4115	1	0	0	1	0	0	copy fasta	KCNMB1	chr5	170369671	170394367
KCNMB1_chr5_170369671_170394367	0/0	t0057	4115	1	0	0	1	0	0	copy fasta	KCNMB1	chr5	170369671	170394367
KCNMB1_chr5_170369671_170394367	0/0	t0058	4116	1	0	0	1	0	0	copy fasta	KCNMB1	chr5	170369671	170394367
KCNMB1_chr5_170369671_170394367	0/0	t0059	4115	1	1	0	0	0	0	copy fasta	KCNMB1	chr5	170369671	170394367
KCNMB1_chr5_170369671_170394367	0/0	t0060	4115	1	0	1	0	0	0	copy fasta	KCNMB1	chr5	170369671	170394367
KCNMB1_chr5_170369671_170394367	0/0	t0061	4115	1	0	0	0	0	1	copy fasta	KCNMB1	chr5	170369671	170394367