JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
KCNMB1_chr5_170369671_170394367	0/0	t0062	4115	1	0	0	1	0	0	copy fasta	KCNMB1	chr5	170369671	170394367
KCNMB1_chr5_170369671_170394367	0/0	t0063	4115	1	1	0	0	0	0	copy fasta	KCNMB1	chr5	170369671	170394367
KCNMB1_chr5_170369671_170394367	0/0	t0064	4169	1	0	1	0	0	0	copy fasta	KCNMB1	chr5	170369671	170394367
KCNMB1_chr5_170369671_170394367	0/0	t0065	4168	1	0	0	1	0	0	copy fasta	KCNMB1	chr5	170369671	170394367
KCNMB1_chr5_170369671_170394367	0/0	t0066	4167	1	0	0	0	1	0	copy fasta	KCNMB1	chr5	170369671	170394367
KCNMB1_chr5_170369671_170394367	0/0	t0067	4168	1	0	0	1	0	0	copy fasta	KCNMB1	chr5	170369671	170394367
KCNMB1_chr5_170369671_170394367	0/0	t0068	4169	1	1	0	0	0	0	copy fasta	KCNMB1	chr5	170369671	170394367
KCNMB1_chr5_170369671_170394367	0/0	t0069	4170	1	1	0	0	0	0	copy fasta	KCNMB1	chr5	170369671	170394367
KCNMB1_chr5_170369671_170394367	0/0	t0070	4142	1	1	0	0	0	0	copy fasta	KCNMB1	chr5	170369671	170394367
KCNMB1_chr5_170369671_170394367	0/0	t0071	4137	1	1	0	0	0	0	copy fasta	KCNMB1	chr5	170369671	170394367
KCNMB1_chr5_170369671_170394367	0/0	t0072	4168	1	0	0	1	0	0	copy fasta	KCNMB1	chr5	170369671	170394367
KCNMB1_chr5_170369671_170394367	0/0	t0073	4167	1	1	0	0	0	0	copy fasta	KCNMB1	chr5	170369671	170394367
KCNMB1_chr5_170369671_170394367	0/0	t0074	4167	1	0	0	1	0	0	copy fasta	KCNMB1	chr5	170369671	170394367
KCNMB1_chr5_170369671_170394367	0/0	t0075	4167	1	0	0	1	0	0	copy fasta	KCNMB1	chr5	170369671	170394367
KCNMB1_chr5_170369671_170394367	0/0	t0076	4140	1	0	0	0	1	0	copy fasta	KCNMB1	chr5	170369671	170394367
KCNMB1_chr5_170369671_170394367	0/0	t0077	4167	1	1	0	0	0	0	copy fasta	KCNMB1	chr5	170369671	170394367
KCNMB1_chr5_170369671_170394367	0/0	t0078	4165	1	1	0	0	0	0	copy fasta	KCNMB1	chr5	170369671	170394367
KCNMB1_chr5_170369671_170394367	0/0	t0079	4168	1	1	0	0	0	0	copy fasta	KCNMB1	chr5	170369671	170394367
KCNMB1_chr5_170369671_170394367	0/0	t0080	4153	1	1	0	0	0	0	copy fasta	KCNMB1	chr5	170369671	170394367
KCNMB1_chr5_170369671_170394367	0/0	t0081	4167	1	0	0	1	0	0	copy fasta	KCNMB1	chr5	170369671	170394367
KCNMB1_chr5_170369671_170394367	0/0	t0082	4168	1	1	0	0	0	0	copy fasta	KCNMB1	chr5	170369671	170394367
KCNMB1_chr5_170369671_170394367	0/0	t0083	4114	1	0	0	1	0	0	copy fasta	KCNMB1	chr5	170369671	170394367
KCNMB1_chr5_170369671_170394367	0/0	t0084	4168	1	0	0	0	0	1	copy fasta	KCNMB1	chr5	170369671	170394367
KCNMB1_chr5_170369671_170394367	0/0	t0085	4166	1	1	0	0	0	0	copy fasta	KCNMB1	chr5	170369671	170394367
KCNMB1_chr5_170369671_170394367	0/0	t0086	4142	1	0	1	0	0	0	copy fasta	KCNMB1	chr5	170369671	170394367
KCNMB1_chr5_170369671_170394367	0/0	t0087	4168	1	0	0	1	0	0	copy fasta	KCNMB1	chr5	170369671	170394367
KCNMB1_chr5_170369671_170394367	0/0	t0088	4167	1	0	0	1	0	0	copy fasta	KCNMB1	chr5	170369671	170394367
KCNMB1_chr5_170369671_170394367	0/0	t0089	4167	1	0	0	1	0	0	copy fasta	KCNMB1	chr5	170369671	170394367
KCNMB2_chr3_178531436_178849429	0/0	t0001	1836	75	12	12	40	4	7	copy fasta	KCNMB2	chr3	178531436	178849429
KCNMB2_chr3_178531436_178849429	0/0	t0002	1836	69	33	16	8	5	7	copy fasta	KCNMB2	chr3	178531436	178849429
KCNMB2_chr3_178531436_178849429	0/0	t0003	1836	64	23	13	20	1	7	copy fasta	KCNMB2	chr3	178531436	178849429
KCNMB2_chr3_178531436_178849429	0/0	t0004	1836	18	5	5	4	1	3	copy fasta	KCNMB2	chr3	178531436	178849429
KCNMB2_chr3_178531436_178849429	0/0	t0005	1836	2	2	0	0	0	0	copy fasta	KCNMB2	chr3	178531436	178849429
KCNMB2_chr3_178531436_178849429	0/0	t0006	1836	2	1	0	0	1	0	copy fasta	KCNMB2	chr3	178531436	178849429
KCNMB2_chr3_178531436_178849429	0/0	t0007	1836	1	1	0	0	0	0	copy fasta	KCNMB2	chr3	178531436	178849429
KCNMB2_chr3_178531436_178849429	0/0	t0008	1836	1	1	0	0	0	0	copy fasta	KCNMB2	chr3	178531436	178849429
KCNMB3_chr3_179237771_179256114	1/1	t0001	258	275	48	53	121	12	39	copy fasta	KCNMB3	chr3	179237771	179256114
KCNMB3_chr3_179237771_179256114	0/0	t0002	258	93	40	27	19	2	5	copy fasta	KCNMB3	chr3	179237771	179256114
KCNMB3_chr3_179237771_179256114	0/0	t0003	258	1	1	0	0	0	0	copy fasta	KCNMB3	chr3	179237771	179256114
KCNMB3_chr3_179237771_179256114	0/0	t0004	258	1	1	0	0	0	0	copy fasta	KCNMB3	chr3	179237771	179256114
KCNMB4_chr12_70361290_70439292	0/0	t0001	4085	137	24	21	81	3	8	copy fasta	KCNMB4	chr12	70361290	70439292
KCNMB4_chr12_70361290_70439292	0/0	t0002	4085	80	11	22	36	2	9	copy fasta	KCNMB4	chr12	70361290	70439292
KCNMB4_chr12_70361290_70439292	0/0	t0003	4087	47	5	6	29	1	6	copy fasta	KCNMB4	chr12	70361290	70439292
KCNMB4_chr12_70361290_70439292	0/0	t0004	4086	18	11	2	3	0	2	copy fasta	KCNMB4	chr12	70361290	70439292
KCNMB4_chr12_70361290_70439292	1/0	t0005	4085	12	0	7	0	2	2	copy fasta	KCNMB4	chr12	70361290	70439292
KCNMB4_chr12_70361290_70439292	0/1	t0006	4085	9	6	2	0	0	0	copy fasta	KCNMB4	chr12	70361290	70439292
KCNMB4_chr12_70361290_70439292	0/0	t0007	4085	6	6	0	0	0	0	copy fasta	KCNMB4	chr12	70361290	70439292
KCNMB4_chr12_70361290_70439292	0/0	t0008	4085	5	4	1	0	0	0	copy fasta	KCNMB4	chr12	70361290	70439292
KCNMB4_chr12_70361290_70439292	0/0	t0009	4086	5	1	3	0	1	0	copy fasta	KCNMB4	chr12	70361290	70439292
KCNMB4_chr12_70361290_70439292	0/0	t0010	4086	4	0	2	1	0	1	copy fasta	KCNMB4	chr12	70361290	70439292