JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
KCNMB4_chr12_70361290_70439292	0/0	t0011	4085	3	3	0	0	0	0	copy fasta	KCNMB4	chr12	70361290	70439292
KCNMB4_chr12_70361290_70439292	0/0	t0012	4086	3	1	0	2	0	0	copy fasta	KCNMB4	chr12	70361290	70439292
KCNMB4_chr12_70361290_70439292	0/0	t0013	4085	2	2	0	0	0	0	copy fasta	KCNMB4	chr12	70361290	70439292
KCNMB4_chr12_70361290_70439292	0/0	t0014	4086	2	1	1	0	0	0	copy fasta	KCNMB4	chr12	70361290	70439292
KCNMB4_chr12_70361290_70439292	0/0	t0015	4086	2	0	0	2	0	0	copy fasta	KCNMB4	chr12	70361290	70439292
KCNMB4_chr12_70361290_70439292	0/0	t0016	4085	2	0	0	2	0	0	copy fasta	KCNMB4	chr12	70361290	70439292
KCNMB4_chr12_70361290_70439292	0/0	t0017	4085	2	2	0	0	0	0	copy fasta	KCNMB4	chr12	70361290	70439292
KCNMB4_chr12_70361290_70439292	0/0	t0018	4084	2	2	0	0	0	0	copy fasta	KCNMB4	chr12	70361290	70439292
KCNMB4_chr12_70361290_70439292	0/0	t0019	4085	2	2	0	0	0	0	copy fasta	KCNMB4	chr12	70361290	70439292
KCNMB4_chr12_70361290_70439292	0/0	t0020	4086	2	0	1	1	0	0	copy fasta	KCNMB4	chr12	70361290	70439292
KCNMB4_chr12_70361290_70439292	0/0	t0021	4084	1	1	0	0	0	0	copy fasta	KCNMB4	chr12	70361290	70439292
KCNMB4_chr12_70361290_70439292	0/0	t0022	4085	1	0	1	0	0	0	copy fasta	KCNMB4	chr12	70361290	70439292
KCNMB4_chr12_70361290_70439292	0/0	t0023	4085	1	1	0	0	0	0	copy fasta	KCNMB4	chr12	70361290	70439292
KCNMB4_chr12_70361290_70439292	0/0	t0024	4085	1	1	0	0	0	0	copy fasta	KCNMB4	chr12	70361290	70439292
KCNMB4_chr12_70361290_70439292	0/0	t0025	4085	1	1	0	0	0	0	copy fasta	KCNMB4	chr12	70361290	70439292
KCNMB4_chr12_70361290_70439292	0/0	t0026	4085	1	1	0	0	0	0	copy fasta	KCNMB4	chr12	70361290	70439292
KCNMB4_chr12_70361290_70439292	0/0	t0027	4086	1	1	0	0	0	0	copy fasta	KCNMB4	chr12	70361290	70439292
KCNMB4_chr12_70361290_70439292	0/0	t0028	4085	1	1	0	0	0	0	copy fasta	KCNMB4	chr12	70361290	70439292
KCNMB4_chr12_70361290_70439292	0/0	t0029	4085	1	0	0	1	0	0	copy fasta	KCNMB4	chr12	70361290	70439292
KCNMB4_chr12_70361290_70439292	0/0	t0030	4085	1	0	0	0	0	1	copy fasta	KCNMB4	chr12	70361290	70439292
KCNMB4_chr12_70361290_70439292	0/0	t0031	4087	1	0	0	1	0	0	copy fasta	KCNMB4	chr12	70361290	70439292
KCNMB4_chr12_70361290_70439292	0/0	t0032	4085	1	0	0	1	0	0	copy fasta	KCNMB4	chr12	70361290	70439292
KCNMB4_chr12_70361290_70439292	0/0	t0033	4085	1	1	0	0	0	0	copy fasta	KCNMB4	chr12	70361290	70439292
KCNMB4_chr12_70361290_70439292	0/0	t0034	4085	1	0	0	1	0	0	copy fasta	KCNMB4	chr12	70361290	70439292
KCNMB4_chr12_70361290_70439292	0/0	t0035	4085	1	0	1	0	0	0	copy fasta	KCNMB4	chr12	70361290	70439292
KCNMB4_chr12_70361290_70439292	0/0	t0036	4085	1	0	0	0	0	1	copy fasta	KCNMB4	chr12	70361290	70439292
KCNMB4_chr12_70361290_70439292	0/0	t0037	4086	1	0	0	0	1	0	copy fasta	KCNMB4	chr12	70361290	70439292
KCNMB4_chr12_70361290_70439292	0/0	t0038	4085	1	0	0	1	0	0	copy fasta	KCNMB4	chr12	70361290	70439292
KCNMB4_chr12_70361290_70439292	0/0	t0039	4085	1	1	0	0	0	0	copy fasta	KCNMB4	chr12	70361290	70439292
KCNMB4_chr12_70361290_70439292	0/0	t0040	4086	1	0	0	0	0	1	copy fasta	KCNMB4	chr12	70361290	70439292
KCNMB4_chr12_70361290_70439292	0/0	t0041	4086	1	1	0	0	0	0	copy fasta	KCNMB4	chr12	70361290	70439292
KCNMB4_chr12_70361290_70439292	0/0	t0042	4085	1	0	0	0	0	1	copy fasta	KCNMB4	chr12	70361290	70439292
KCNMB4_chr12_70361290_70439292	0/0	t0043	4086	1	1	0	0	0	0	copy fasta	KCNMB4	chr12	70361290	70439292
KCNMB4_chr12_70361290_70439292	0/0	t0044	4086	1	1	0	0	0	0	copy fasta	KCNMB4	chr12	70361290	70439292
KCNMB4_chr12_70361290_70439292	0/0	t0045	4087	1	0	1	0	0	0	copy fasta	KCNMB4	chr12	70361290	70439292
KCNMB4_chr12_70361290_70439292	0/0	t0046	4087	1	0	1	0	0	0	copy fasta	KCNMB4	chr12	70361290	70439292
KCNMB4_chr12_70361290_70439292	0/0	t0047	4087	1	0	0	0	0	1	copy fasta	KCNMB4	chr12	70361290	70439292
KCNMB4_chr12_70361290_70439292	0/0	t0048	4086	1	1	0	0	0	0	copy fasta	KCNMB4	chr12	70361290	70439292
KCNMB4_chr12_70361290_70439292	0/0	t0049	4085	1	1	0	0	0	0	copy fasta	KCNMB4	chr12	70361290	70439292
KCNMB4_chr12_70361290_70439292	0/0	t0050	4086	1	0	0	1	0	0	copy fasta	KCNMB4	chr12	70361290	70439292
KCNMB4_chr12_70361290_70439292	0/0	t0051	4087	1	0	0	1	0	0	copy fasta	KCNMB4	chr12	70361290	70439292
KCNMB4_chr12_70361290_70439292	0/0	t0052	4088	1	0	0	0	0	1	copy fasta	KCNMB4	chr12	70361290	70439292
KCNMB4_chr12_70361290_70439292	0/0	t0053	4085	1	1	0	0	0	0	copy fasta	KCNMB4	chr12	70361290	70439292
KCNN1_chr19_17962107_18005085	0/0	t0001	1972	149	30	21	78	5	15	copy fasta	KCNN1	chr19	17962107	18005085
KCNN1_chr19_17962107_18005085	1/0	t0002	1972	141	23	34	61	6	16	copy fasta	KCNN1	chr19	17962107	18005085
KCNN1_chr19_17962107_18005085	0/0	t0003	1972	20	0	3	16	1	0	copy fasta	KCNN1	chr19	17962107	18005085
KCNN1_chr19_17962107_18005085	0/1	t0004	1972	15	8	4	1	0	1	copy fasta	KCNN1	chr19	17962107	18005085
KCNN1_chr19_17962107_18005085	0/0	t0005	1972	12	7	1	0	2	2	copy fasta	KCNN1	chr19	17962107	18005085
KCNN1_chr19_17962107_18005085	0/0	t0006	1972	8	7	1	0	0	0	copy fasta	KCNN1	chr19	17962107	18005085
KCNN1_chr19_17962107_18005085	0/0	t0007	1973	6	1	1	4	0	0	copy fasta	KCNN1	chr19	17962107	18005085