JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
KCNN1_chr19_17962107_18005085	0/0	t0008	1973	5	0	1	3	0	1	copy fasta	KCNN1	chr19	17962107	18005085
KCNN1_chr19_17962107_18005085	0/0	t0009	1972	4	4	0	0	0	0	copy fasta	KCNN1	chr19	17962107	18005085
KCNN1_chr19_17962107_18005085	0/0	t0010	1972	3	3	0	0	0	0	copy fasta	KCNN1	chr19	17962107	18005085
KCNN1_chr19_17962107_18005085	0/0	t0011	1972	2	2	0	0	0	0	copy fasta	KCNN1	chr19	17962107	18005085
KCNN1_chr19_17962107_18005085	0/0	t0012	1972	2	2	0	0	0	0	copy fasta	KCNN1	chr19	17962107	18005085
KCNN1_chr19_17962107_18005085	0/0	t0013	1972	1	0	0	0	0	1	copy fasta	KCNN1	chr19	17962107	18005085
KCNN1_chr19_17962107_18005085	0/0	t0014	1972	1	0	1	0	0	0	copy fasta	KCNN1	chr19	17962107	18005085
KCNN1_chr19_17962107_18005085	0/0	t0015	1972	1	1	0	0	0	0	copy fasta	KCNN1	chr19	17962107	18005085
KCNN1_chr19_17962107_18005085	0/0	t0016	1972	1	0	0	0	0	1	copy fasta	KCNN1	chr19	17962107	18005085
KCNN1_chr19_17962107_18005085	0/0	t0017	1972	1	0	0	1	0	0	copy fasta	KCNN1	chr19	17962107	18005085
KCNN1_chr19_17962107_18005085	0/0	t0018	1972	1	0	0	1	0	0	copy fasta	KCNN1	chr19	17962107	18005085
KCNN1_chr19_17962107_18005085	0/0	t0019	1973	1	0	1	0	0	0	copy fasta	KCNN1	chr19	17962107	18005085
KCNN1_chr19_17962107_18005085	0/0	t0020	1972	1	1	0	0	0	0	copy fasta	KCNN1	chr19	17962107	18005085
KCNN1_chr19_17962107_18005085	0/0	t0021	1972	1	1	0	0	0	0	copy fasta	KCNN1	chr19	17962107	18005085
KCNN1_chr19_17962107_18005085	0/0	t0022	1972	1	0	0	0	0	1	copy fasta	KCNN1	chr19	17962107	18005085
KCNN1_chr19_17962107_18005085	0/0	t0023	1972	1	0	0	1	0	0	copy fasta	KCNN1	chr19	17962107	18005085
KCNN2_chr5_114357070_114501496	1/1	t0001	385	248	88	56	57	14	31	copy fasta	KCNN2	chr5	114357070	114501496
KCNN2_chr5_114357070_114501496	0/0	t0002	385	1	0	0	0	0	1	copy fasta	KCNN2	chr5	114357070	114501496
KCNN2_chr5_114357070_114501496	0/0	t0003	385	1	0	0	1	0	0	copy fasta	KCNN2	chr5	114357070	114501496
KCNN3_chr1_154692455_154875281	0/0	t0001	10836	33	2	11	14	1	5	copy fasta	KCNN3	chr1	154692455	154875281
KCNN3_chr1_154692455_154875281	0/0	t0002	10834	9	0	4	3	1	1	copy fasta	KCNN3	chr1	154692455	154875281
KCNN3_chr1_154692455_154875281	0/0	t0003	10815	9	9	0	0	0	0	copy fasta	KCNN3	chr1	154692455	154875281
KCNN3_chr1_154692455_154875281	0/0	t0004	10838	8	0	4	1	0	3	copy fasta	KCNN3	chr1	154692455	154875281
KCNN3_chr1_154692455_154875281	0/0	t0005	10815	8	8	0	0	0	0	copy fasta	KCNN3	chr1	154692455	154875281
KCNN3_chr1_154692455_154875281	0/0	t0006	10834	7	3	3	1	0	0	copy fasta	KCNN3	chr1	154692455	154875281
KCNN3_chr1_154692455_154875281	0/0	t0007	10835	7	1	1	1	2	2	copy fasta	KCNN3	chr1	154692455	154875281
KCNN3_chr1_154692455_154875281	0/0	t0008	10834	6	0	1	2	1	2	copy fasta	KCNN3	chr1	154692455	154875281
KCNN3_chr1_154692455_154875281	0/0	t0009	10832	5	0	2	1	1	1	copy fasta	KCNN3	chr1	154692455	154875281
KCNN3_chr1_154692455_154875281	0/0	t0010	10832	4	0	0	1	0	3	copy fasta	KCNN3	chr1	154692455	154875281
KCNN3_chr1_154692455_154875281	0/0	t0011	10830	4	3	0	1	0	0	copy fasta	KCNN3	chr1	154692455	154875281
KCNN3_chr1_154692455_154875281	0/0	t0012	10815	4	4	0	0	0	0	copy fasta	KCNN3	chr1	154692455	154875281
KCNN3_chr1_154692455_154875281	0/0	t0013	10837	3	0	0	1	0	2	copy fasta	KCNN3	chr1	154692455	154875281
KCNN3_chr1_154692455_154875281	0/0	t0014	10835	3	1	0	2	0	0	copy fasta	KCNN3	chr1	154692455	154875281
KCNN3_chr1_154692455_154875281	0/0	t0015	10844	3	0	1	2	0	0	copy fasta	KCNN3	chr1	154692455	154875281
KCNN3_chr1_154692455_154875281	0/0	t0016	10840	3	0	0	2	1	0	copy fasta	KCNN3	chr1	154692455	154875281
KCNN3_chr1_154692455_154875281	0/0	t0017	10837	3	3	0	0	0	0	copy fasta	KCNN3	chr1	154692455	154875281
KCNN3_chr1_154692455_154875281	0/0	t0018	10835	3	0	1	0	1	1	copy fasta	KCNN3	chr1	154692455	154875281
KCNN3_chr1_154692455_154875281	0/0	t0019	10834	3	1	2	0	0	0	copy fasta	KCNN3	chr1	154692455	154875281
KCNN3_chr1_154692455_154875281	0/0	t0020	10833	3	2	1	0	0	0	copy fasta	KCNN3	chr1	154692455	154875281
KCNN3_chr1_154692455_154875281	0/0	t0021	10839	2	0	0	1	0	1	copy fasta	KCNN3	chr1	154692455	154875281
KCNN3_chr1_154692455_154875281	0/0	t0022	10831	2	2	0	0	0	0	copy fasta	KCNN3	chr1	154692455	154875281
KCNN3_chr1_154692455_154875281	0/0	t0023	10832	2	0	0	0	1	1	copy fasta	KCNN3	chr1	154692455	154875281
KCNN3_chr1_154692455_154875281	0/0	t0024	10840	2	1	0	1	0	0	copy fasta	KCNN3	chr1	154692455	154875281
KCNN3_chr1_154692455_154875281	0/0	t0025	10836	2	0	0	1	0	1	copy fasta	KCNN3	chr1	154692455	154875281
KCNN3_chr1_154692455_154875281	0/0	t0026	10821	2	2	0	0	0	0	copy fasta	KCNN3	chr1	154692455	154875281
KCNN3_chr1_154692455_154875281	0/0	t0027	10836	2	2	0	0	0	0	copy fasta	KCNN3	chr1	154692455	154875281
KCNN3_chr1_154692455_154875281	0/0	t0028	10829	2	2	0	0	0	0	copy fasta	KCNN3	chr1	154692455	154875281
KCNN3_chr1_154692455_154875281	0/0	t0029	10836	2	2	0	0	0	0	copy fasta	KCNN3	chr1	154692455	154875281
KCNN3_chr1_154692455_154875281	0/0	t0030	10834	1	0	0	0	1	0	copy fasta	KCNN3	chr1	154692455	154875281
KCNN3_chr1_154692455_154875281	0/0	t0031	10834	1	0	0	0	0	1	copy fasta	KCNN3	chr1	154692455	154875281