JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
KCNN3_chr1_154692455_154875281	0/0	t0032	10824	1	0	1	0	0	0	copy fasta	KCNN3	chr1	154692455	154875281
KCNN3_chr1_154692455_154875281	0/0	t0033	10838	1	1	0	0	0	0	copy fasta	KCNN3	chr1	154692455	154875281
KCNN3_chr1_154692455_154875281	0/0	t0034	10834	1	1	0	0	0	0	copy fasta	KCNN3	chr1	154692455	154875281
KCNN3_chr1_154692455_154875281	0/0	t0035	10835	1	0	0	0	0	1	copy fasta	KCNN3	chr1	154692455	154875281
KCNN3_chr1_154692455_154875281	0/0	t0036	10833	1	0	0	1	0	0	copy fasta	KCNN3	chr1	154692455	154875281
KCNN3_chr1_154692455_154875281	0/0	t0037	10834	1	1	0	0	0	0	copy fasta	KCNN3	chr1	154692455	154875281
KCNN3_chr1_154692455_154875281	0/0	t0038	10854	1	0	0	1	0	0	copy fasta	KCNN3	chr1	154692455	154875281
KCNN3_chr1_154692455_154875281	0/0	t0039	10846	1	0	0	1	0	0	copy fasta	KCNN3	chr1	154692455	154875281
KCNN3_chr1_154692455_154875281	0/0	t0040	10842	1	0	0	0	0	1	copy fasta	KCNN3	chr1	154692455	154875281
KCNN3_chr1_154692455_154875281	0/0	t0041	10840	1	0	1	0	0	0	copy fasta	KCNN3	chr1	154692455	154875281
KCNN3_chr1_154692455_154875281	0/0	t0042	10838	1	1	0	0	0	0	copy fasta	KCNN3	chr1	154692455	154875281
KCNN3_chr1_154692455_154875281	0/0	t0043	10836	1	0	0	1	0	0	copy fasta	KCNN3	chr1	154692455	154875281
KCNN3_chr1_154692455_154875281	0/0	t0044	10836	1	0	0	1	0	0	copy fasta	KCNN3	chr1	154692455	154875281
KCNN3_chr1_154692455_154875281	0/0	t0045	10836	1	0	1	0	0	0	copy fasta	KCNN3	chr1	154692455	154875281
KCNN3_chr1_154692455_154875281	0/0	t0046	10837	1	1	0	0	0	0	copy fasta	KCNN3	chr1	154692455	154875281
KCNN3_chr1_154692455_154875281	0/0	t0047	10834	1	0	0	0	1	0	copy fasta	KCNN3	chr1	154692455	154875281
KCNN3_chr1_154692455_154875281	0/0	t0048	10835	1	1	0	0	0	0	copy fasta	KCNN3	chr1	154692455	154875281
KCNN3_chr1_154692455_154875281	0/0	t0049	10834	1	0	1	0	0	0	copy fasta	KCNN3	chr1	154692455	154875281
KCNN3_chr1_154692455_154875281	0/0	t0050	10830	1	0	0	1	0	0	copy fasta	KCNN3	chr1	154692455	154875281
KCNN3_chr1_154692455_154875281	0/0	t0051	10850	1	0	0	1	0	0	copy fasta	KCNN3	chr1	154692455	154875281
KCNN3_chr1_154692455_154875281	0/0	t0052	10824	1	0	1	0	0	0	copy fasta	KCNN3	chr1	154692455	154875281
KCNN3_chr1_154692455_154875281	0/0	t0053	10840	1	0	0	1	0	0	copy fasta	KCNN3	chr1	154692455	154875281
KCNN3_chr1_154692455_154875281	0/0	t0054	10835	1	1	0	0	0	0	copy fasta	KCNN3	chr1	154692455	154875281
KCNN3_chr1_154692455_154875281	0/0	t0055	10833	1	0	0	0	0	1	copy fasta	KCNN3	chr1	154692455	154875281
KCNN3_chr1_154692455_154875281	0/0	t0056	10831	1	0	0	0	0	1	copy fasta	KCNN3	chr1	154692455	154875281
KCNN3_chr1_154692455_154875281	0/0	t0057	10836	1	0	1	0	0	0	copy fasta	KCNN3	chr1	154692455	154875281
KCNN3_chr1_154692455_154875281	0/0	t0058	10836	1	1	0	0	0	0	copy fasta	KCNN3	chr1	154692455	154875281
KCNN3_chr1_154692455_154875281	0/0	t0059	10836	1	0	0	1	0	0	copy fasta	KCNN3	chr1	154692455	154875281
KCNN3_chr1_154692455_154875281	0/0	t0060	10845	1	0	0	1	0	0	copy fasta	KCNN3	chr1	154692455	154875281
KCNN3_chr1_154692455_154875281	0/1	t0061	10843	1	0	0	0	0	0	copy fasta	KCNN3	chr1	154692455	154875281
KCNN3_chr1_154692455_154875281	0/0	t0062	10839	1	0	1	0	0	0	copy fasta	KCNN3	chr1	154692455	154875281
KCNN3_chr1_154692455_154875281	0/0	t0063	10833	1	0	0	1	0	0	copy fasta	KCNN3	chr1	154692455	154875281
KCNN3_chr1_154692455_154875281	0/0	t0064	10813	1	0	1	0	0	0	copy fasta	KCNN3	chr1	154692455	154875281
KCNN3_chr1_154692455_154875281	0/0	t0065	10842	1	0	0	1	0	0	copy fasta	KCNN3	chr1	154692455	154875281
KCNN3_chr1_154692455_154875281	0/0	t0066	10838	1	0	0	0	0	1	copy fasta	KCNN3	chr1	154692455	154875281
KCNN3_chr1_154692455_154875281	0/0	t0067	10838	1	0	0	1	0	0	copy fasta	KCNN3	chr1	154692455	154875281
KCNN3_chr1_154692455_154875281	0/0	t0068	10838	1	0	0	0	0	1	copy fasta	KCNN3	chr1	154692455	154875281
KCNN3_chr1_154692455_154875281	0/0	t0069	10836	1	0	1	0	0	0	copy fasta	KCNN3	chr1	154692455	154875281
KCNN3_chr1_154692455_154875281	0/0	t0070	10830	1	0	1	0	0	0	copy fasta	KCNN3	chr1	154692455	154875281
KCNN3_chr1_154692455_154875281	0/0	t0071	10828	1	0	0	0	1	0	copy fasta	KCNN3	chr1	154692455	154875281
KCNN3_chr1_154692455_154875281	0/0	t0072	10819	1	0	0	1	0	0	copy fasta	KCNN3	chr1	154692455	154875281
KCNN3_chr1_154692455_154875281	0/0	t0073	10838	1	0	0	0	1	0	copy fasta	KCNN3	chr1	154692455	154875281
KCNN3_chr1_154692455_154875281	0/0	t0074	10836	1	1	0	0	0	0	copy fasta	KCNN3	chr1	154692455	154875281
KCNN3_chr1_154692455_154875281	0/0	t0075	10834	1	1	0	0	0	0	copy fasta	KCNN3	chr1	154692455	154875281
KCNN3_chr1_154692455_154875281	0/0	t0076	10840	1	1	0	0	0	0	copy fasta	KCNN3	chr1	154692455	154875281
KCNN3_chr1_154692455_154875281	0/0	t0077	10841	1	1	0	0	0	0	copy fasta	KCNN3	chr1	154692455	154875281
KCNN3_chr1_154692455_154875281	0/0	t0078	10834	1	1	0	0	0	0	copy fasta	KCNN3	chr1	154692455	154875281
KCNN3_chr1_154692455_154875281	0/0	t0079	10833	1	1	0	0	0	0	copy fasta	KCNN3	chr1	154692455	154875281
KCNN3_chr1_154692455_154875281	0/0	t0080	10839	1	1	0	0	0	0	copy fasta	KCNN3	chr1	154692455	154875281
KCNN3_chr1_154692455_154875281	0/0	t0081	10835	1	0	1	0	0	0	copy fasta	KCNN3	chr1	154692455	154875281