JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
KCNN3_chr1_154692455_154875281	0/0	t0082	10821	1	1	0	0	0	0	copy fasta	KCNN3	chr1	154692455	154875281
KCNN3_chr1_154692455_154875281	0/0	t0083	10835	1	0	0	1	0	0	copy fasta	KCNN3	chr1	154692455	154875281
KCNN3_chr1_154692455_154875281	0/0	t0084	10807	1	0	0	1	0	0	copy fasta	KCNN3	chr1	154692455	154875281
KCNN3_chr1_154692455_154875281	0/0	t0085	10844	1	1	0	0	0	0	copy fasta	KCNN3	chr1	154692455	154875281
KCNN3_chr1_154692455_154875281	0/0	t0086	10834	1	1	0	0	0	0	copy fasta	KCNN3	chr1	154692455	154875281
KCNN3_chr1_154692455_154875281	0/0	t0087	10831	1	1	0	0	0	0	copy fasta	KCNN3	chr1	154692455	154875281
KCNN3_chr1_154692455_154875281	0/0	t0088	10832	1	1	0	0	0	0	copy fasta	KCNN3	chr1	154692455	154875281
KCNN3_chr1_154692455_154875281	0/0	t0089	10828	1	1	0	0	0	0	copy fasta	KCNN3	chr1	154692455	154875281
KCNN3_chr1_154692455_154875281	0/0	t0090	10833	1	0	1	0	0	0	copy fasta	KCNN3	chr1	154692455	154875281
KCNN3_chr1_154692455_154875281	0/0	t0091	10843	1	1	0	0	0	0	copy fasta	KCNN3	chr1	154692455	154875281
KCNN3_chr1_154692455_154875281	0/0	t0092	10840	1	0	0	1	0	0	copy fasta	KCNN3	chr1	154692455	154875281
KCNN3_chr1_154692455_154875281	0/0	t0093	10833	1	1	0	0	0	0	copy fasta	KCNN3	chr1	154692455	154875281
KCNN3_chr1_154692455_154875281	0/0	t0094	10834	1	1	0	0	0	0	copy fasta	KCNN3	chr1	154692455	154875281
KCNN3_chr1_154692455_154875281	0/0	t0095	10834	1	1	0	0	0	0	copy fasta	KCNN3	chr1	154692455	154875281
KCNN3_chr1_154692455_154875281	0/0	t0096	10824	1	0	1	0	0	0	copy fasta	KCNN3	chr1	154692455	154875281
KCNN3_chr1_154692455_154875281	0/0	t0097	10815	1	1	0	0	0	0	copy fasta	KCNN3	chr1	154692455	154875281
KCNN3_chr1_154692455_154875281	0/0	t0098	10815	1	1	0	0	0	0	copy fasta	KCNN3	chr1	154692455	154875281
KCNN3_chr1_154692455_154875281	0/0	t0099	10815	1	1	0	0	0	0	copy fasta	KCNN3	chr1	154692455	154875281
KCNN3_chr1_154692455_154875281	1/0	t0100	10839	1	0	0	0	0	0	copy fasta	KCNN3	chr1	154692455	154875281
KCNN3_chr1_154692455_154875281	0/0	t0101	10837	1	1	0	0	0	0	copy fasta	KCNN3	chr1	154692455	154875281
KCNN3_chr1_154692455_154875281	0/0	t0102	10831	1	0	0	0	1	0	copy fasta	KCNN3	chr1	154692455	154875281
KCNN3_chr1_154692455_154875281	0/0	t0103	10837	1	1	0	0	0	0	copy fasta	KCNN3	chr1	154692455	154875281
KCNN3_chr1_154692455_154875281	0/0	t0104	10832	1	1	0	0	0	0	copy fasta	KCNN3	chr1	154692455	154875281
KCNN3_chr1_154692455_154875281	0/0	t0105	10831	1	1	0	0	0	0	copy fasta	KCNN3	chr1	154692455	154875281
KCNN3_chr1_154692455_154875281	0/0	t0106	10808	1	1	0	0	0	0	copy fasta	KCNN3	chr1	154692455	154875281
KCNN3_chr1_154692455_154875281	0/0	t0107	10798	1	0	1	0	0	0	copy fasta	KCNN3	chr1	154692455	154875281
KCNN3_chr1_154692455_154875281	0/0	t0108	10806	1	1	0	0	0	0	copy fasta	KCNN3	chr1	154692455	154875281
KCNN3_chr1_154692455_154875281	0/0	t0109	10832	1	1	0	0	0	0	copy fasta	KCNN3	chr1	154692455	154875281
KCNN3_chr1_154692455_154875281	0/0	t0110	10834	1	1	0	0	0	0	copy fasta	KCNN3	chr1	154692455	154875281
KCNN3_chr1_154692455_154875281	0/0	t0111	10838	1	1	0	0	0	0	copy fasta	KCNN3	chr1	154692455	154875281
KCNN3_chr1_154692455_154875281	0/0	t0112	10833	1	1	0	0	0	0	copy fasta	KCNN3	chr1	154692455	154875281
KCNN3_chr1_154692455_154875281	0/0	t0113	10835	1	0	1	0	0	0	copy fasta	KCNN3	chr1	154692455	154875281
KCNN3_chr1_154692455_154875281	0/0	t0114	10821	1	1	0	0	0	0	copy fasta	KCNN3	chr1	154692455	154875281
KCNN3_chr1_154692455_154875281	0/0	t0115	10835	1	1	0	0	0	0	copy fasta	KCNN3	chr1	154692455	154875281
KCNN3_chr1_154692455_154875281	0/0	t0116	10833	1	1	0	0	0	0	copy fasta	KCNN3	chr1	154692455	154875281
KCNN3_chr1_154692455_154875281	0/0	t0117	10829	1	1	0	0	0	0	copy fasta	KCNN3	chr1	154692455	154875281
KCNN3_chr1_154692455_154875281	0/0	t0118	10848	1	1	0	0	0	0	copy fasta	KCNN3	chr1	154692455	154875281
KCNN3_chr1_154692455_154875281	0/0	t0119	10836	1	1	0	0	0	0	copy fasta	KCNN3	chr1	154692455	154875281
KCNN3_chr1_154692455_154875281	0/0	t0120	10815	1	1	0	0	0	0	copy fasta	KCNN3	chr1	154692455	154875281
KCNN3_chr1_154692455_154875281	0/0	t0121	10834	1	1	0	0	0	0	copy fasta	KCNN3	chr1	154692455	154875281
KCNN4_chr19_43761533_43785973	1/1	t0001	673	316	38	70	153	17	36	copy fasta	KCNN4	chr19	43761533	43785973
KCNN4_chr19_43761533_43785973	0/0	t0002	673	72	24	9	32	0	7	copy fasta	KCNN4	chr19	43761533	43785973
KCNN4_chr19_43761533_43785973	0/0	t0003	673	24	18	4	0	1	1	copy fasta	KCNN4	chr19	43761533	43785973
KCNN4_chr19_43761533_43785973	0/0	t0004	673	9	9	0	0	0	0	copy fasta	KCNN4	chr19	43761533	43785973
KCNN4_chr19_43761533_43785973	0/0	t0005	673	8	8	0	0	0	0	copy fasta	KCNN4	chr19	43761533	43785973
KCNN4_chr19_43761533_43785973	0/0	t0006	673	2	0	0	2	0	0	copy fasta	KCNN4	chr19	43761533	43785973
KCNN4_chr19_43761533_43785973	0/0	t0007	673	2	0	0	2	0	0	copy fasta	KCNN4	chr19	43761533	43785973
KCNN4_chr19_43761533_43785973	0/0	t0008	673	2	1	1	0	0	0	copy fasta	KCNN4	chr19	43761533	43785973
KCNN4_chr19_43761533_43785973	0/0	t0009	673	1	0	0	1	0	0	copy fasta	KCNN4	chr19	43761533	43785973
KCNN4_chr19_43761533_43785973	0/0	t0010	673	1	1	0	0	0	0	copy fasta	KCNN4	chr19	43761533	43785973