Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ABHD4_chr14_22593300_22617963	0/0	t0003	2023	52	30	10	7	1	4	copy fasta	ABHD4	chr14	22593300	22617963
ABHD4_chr14_22593300_22617963	0/0	t0004	2023	23	13	4	0	2	4	copy fasta	ABHD4	chr14	22593300	22617963
ABHD4_chr14_22593300_22617963	0/0	t0005	2023	6	6	0	0	0	0	copy fasta	ABHD4	chr14	22593300	22617963
ABHD4_chr14_22593300_22617963	0/0	t0006	2023	6	5	1	0	0	0	copy fasta	ABHD4	chr14	22593300	22617963
ABHD4_chr14_22593300_22617963	0/0	t0007	2023	2	2	0	0	0	0	copy fasta	ABHD4	chr14	22593300	22617963
ABHD4_chr14_22593300_22617963	0/0	t0008	2023	2	2	0	0	0	0	copy fasta	ABHD4	chr14	22593300	22617963
ABHD4_chr14_22593300_22617963	0/0	t0009	2023	2	0	0	2	0	0	copy fasta	ABHD4	chr14	22593300	22617963
ABHD4_chr14_22593300_22617963	0/0	t0010	2023	2	0	0	2	0	0	copy fasta	ABHD4	chr14	22593300	22617963
ABHD4_chr14_22593300_22617963	0/0	t0011	2023	2	1	1	0	0	0	copy fasta	ABHD4	chr14	22593300	22617963
ABHD4_chr14_22593300_22617963	0/0	t0012	2023	1	1	0	0	0	0	copy fasta	ABHD4	chr14	22593300	22617963
ABHD4_chr14_22593300_22617963	0/0	t0013	1437	1	1	0	0	0	0	copy fasta	ABHD4	chr14	22593300	22617963
ABHD4_chr14_22593300_22617963	0/0	t0014	2023	1	0	0	0	1	0	copy fasta	ABHD4	chr14	22593300	22617963
ABHD4_chr14_22593300_22617963	0/0	t0015	2023	1	0	0	0	0	1	copy fasta	ABHD4	chr14	22593300	22617963
ABHD4_chr14_22593300_22617963	0/0	t0016	2023	1	0	0	1	0	0	copy fasta	ABHD4	chr14	22593300	22617963
ABHD4_chr14_22593300_22617963	0/0	t0017	2023	1	0	0	1	0	0	copy fasta	ABHD4	chr14	22593300	22617963
ABHD5_chr3_43685938_43727725	0/1	t0001	4249	98	14	20	46	4	13	copy fasta	ABHD5	chr3	43685938	43727725
ABHD5_chr3_43685938_43727725	1/0	t0002	4249	55	23	8	15	1	7	copy fasta	ABHD5	chr3	43685938	43727725
ABHD5_chr3_43685938_43727725	0/0	t0003	4249	44	5	6	27	0	6	copy fasta	ABHD5	chr3	43685938	43727725
ABHD5_chr3_43685938_43727725	0/0	t0004	4246	19	14	4	0	0	1	copy fasta	ABHD5	chr3	43685938	43727725
ABHD5_chr3_43685938_43727725	0/0	t0005	4248	9	0	4	3	0	2	copy fasta	ABHD5	chr3	43685938	43727725
ABHD5_chr3_43685938_43727725	0/0	t0006	4247	5	5	0	0	0	0	copy fasta	ABHD5	chr3	43685938	43727725
ABHD5_chr3_43685938_43727725	0/0	t0007	4246	5	5	0	0	0	0	copy fasta	ABHD5	chr3	43685938	43727725
ABHD5_chr3_43685938_43727725	0/0	t0008	4249	4	0	4	0	0	0	copy fasta	ABHD5	chr3	43685938	43727725
ABHD5_chr3_43685938_43727725	0/0	t0009	4250	4	0	1	2	0	1	copy fasta	ABHD5	chr3	43685938	43727725
ABHD5_chr3_43685938_43727725	0/0	t0010	4250	4	0	0	4	0	0	copy fasta	ABHD5	chr3	43685938	43727725
ABHD5_chr3_43685938_43727725	0/0	t0011	4249	3	3	0	0	0	0	copy fasta	ABHD5	chr3	43685938	43727725
ABHD5_chr3_43685938_43727725	0/0	t0012	4246	3	2	1	0	0	0	copy fasta	ABHD5	chr3	43685938	43727725
ABHD5_chr3_43685938_43727725	0/0	t0013	4249	3	0	0	3	0	0	copy fasta	ABHD5	chr3	43685938	43727725
ABHD5_chr3_43685938_43727725	0/0	t0014	4249	2	2	0	0	0	0	copy fasta	ABHD5	chr3	43685938	43727725
ABHD5_chr3_43685938_43727725	0/0	t0015	4249	2	2	0	0	0	0	copy fasta	ABHD5	chr3	43685938	43727725
ABHD5_chr3_43685938_43727725	0/0	t0016	4248	2	0	1	1	0	0	copy fasta	ABHD5	chr3	43685938	43727725
ABHD5_chr3_43685938_43727725	0/0	t0017	4247	2	2	0	0	0	0	copy fasta	ABHD5	chr3	43685938	43727725
ABHD5_chr3_43685938_43727725	0/0	t0018	4249	2	1	0	1	0	0	copy fasta	ABHD5	chr3	43685938	43727725
ABHD5_chr3_43685938_43727725	0/0	t0019	4249	1	0	1	0	0	0	copy fasta	ABHD5	chr3	43685938	43727725
ABHD5_chr3_43685938_43727725	0/0	t0020	4248	1	0	0	1	0	0	copy fasta	ABHD5	chr3	43685938	43727725
ABHD5_chr3_43685938_43727725	0/0	t0021	4250	1	0	0	1	0	0	copy fasta	ABHD5	chr3	43685938	43727725
ABHD5_chr3_43685938_43727725	0/0	t0022	4249	1	1	0	0	0	0	copy fasta	ABHD5	chr3	43685938	43727725
ABHD5_chr3_43685938_43727725	0/0	t0023	4248	1	0	0	1	0	0	copy fasta	ABHD5	chr3	43685938	43727725
ABHD5_chr3_43685938_43727725	0/0	t0024	4250	1	0	0	1	0	0	copy fasta	ABHD5	chr3	43685938	43727725
ABHD5_chr3_43685938_43727725	0/0	t0025	4249	1	1	0	0	0	0	copy fasta	ABHD5	chr3	43685938	43727725
ABHD5_chr3_43685938_43727725	0/0	t0026	4249	1	1	0	0	0	0	copy fasta	ABHD5	chr3	43685938	43727725
ABHD5_chr3_43685938_43727725	0/0	t0027	4248	1	1	0	0	0	0	copy fasta	ABHD5	chr3	43685938	43727725
ABHD5_chr3_43685938_43727725	0/0	t0028	4248	1	1	0	0	0	0	copy fasta	ABHD5	chr3	43685938	43727725
ABHD5_chr3_43685938_43727725	0/0	t0029	4249	1	0	0	1	0	0	copy fasta	ABHD5	chr3	43685938	43727725
ABHD5_chr3_43685938_43727725	0/0	t0030	4247	1	1	0	0	0	0	copy fasta	ABHD5	chr3	43685938	43727725
ABHD5_chr3_43685938_43727725	0/0	t0031	4249	1	0	0	1	0	0	copy fasta	ABHD5	chr3	43685938	43727725
ABHD5_chr3_43685938_43727725	0/0	t0032	4249	1	0	0	1	0	0	copy fasta	ABHD5	chr3	43685938	43727725
ABHD5_chr3_43685938_43727725	0/0	t0033	4249	1	0	0	1	0	0	copy fasta	ABHD5	chr3	43685938	43727725
ABHD5_chr3_43685938_43727725	0/0	t0034	4249	1	0	0	1	0	0	copy fasta	ABHD5	chr3	43685938	43727725
ABHD5_chr3_43685938_43727725	0/0	t0035	4249	1	0	0	1	0	0	copy fasta	ABHD5	chr3	43685938	43727725