Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ANTXR2_chr4_79896146_80078229	0/0	t0083	6953	1	1	0	0	0	0	copy fasta	ANTXR2	chr4	79896146	80078229
ANTXRL_chr10_46281997_46335129	1/0	t0001	312	306	58	61	126	17	43	copy fasta	ANTXRL	chr10	46281997	46335129
ANTXRL_chr10_46281997_46335129	0/0	t0002	312	32	5	5	17	0	5	copy fasta	ANTXRL	chr10	46281997	46335129
ANTXRL_chr10_46281997_46335129	0/0	t0003	312	25	21	2	1	1	0	copy fasta	ANTXRL	chr10	46281997	46335129
ANTXRL_chr10_46281997_46335129	0/0	t0004	312	3	2	1	0	0	0	copy fasta	ANTXRL	chr10	46281997	46335129
ANTXRL_chr10_46281997_46335129	0/0	t0005	312	2	2	0	0	0	0	copy fasta	ANTXRL	chr10	46281997	46335129
ANTXRL_chr10_46281997_46335129	0/0	t0006	312	1	0	1	0	0	0	copy fasta	ANTXRL	chr10	46281997	46335129
ANXA10_chr4_168087537_168192736	1/1	t0001	467	284	92	54	92	12	32	copy fasta	ANXA10	chr4	168087537	168192736
ANXA11_chr10_80145889_80210537	0/0	t0001	5217	95	11	13	50	6	15	copy fasta	ANXA11	chr10	80145889	80210537
ANXA11_chr10_80145889_80210537	0/0	t0002	5217	70	28	4	28	2	8	copy fasta	ANXA11	chr10	80145889	80210537
ANXA11_chr10_80145889_80210537	0/0	t0003	5218	38	0	13	19	1	5	copy fasta	ANXA11	chr10	80145889	80210537
ANXA11_chr10_80145889_80210537	0/1	t0004	5217	37	5	12	7	5	7	copy fasta	ANXA11	chr10	80145889	80210537
ANXA11_chr10_80145889_80210537	0/0	t0005	5219	25	2	9	8	0	6	copy fasta	ANXA11	chr10	80145889	80210537
ANXA11_chr10_80145889_80210537	0/0	t0006	5217	13	11	2	0	0	0	copy fasta	ANXA11	chr10	80145889	80210537
ANXA11_chr10_80145889_80210537	0/0	t0007	5218	12	0	0	12	0	0	copy fasta	ANXA11	chr10	80145889	80210537
ANXA11_chr10_80145889_80210537	0/0	t0008	5216	12	7	3	0	0	2	copy fasta	ANXA11	chr10	80145889	80210537
ANXA11_chr10_80145889_80210537	0/0	t0009	5217	11	10	1	0	0	0	copy fasta	ANXA11	chr10	80145889	80210537
ANXA11_chr10_80145889_80210537	0/0	t0010	5217	7	0	0	7	0	0	copy fasta	ANXA11	chr10	80145889	80210537
ANXA11_chr10_80145889_80210537	0/0	t0011	5217	7	0	6	0	1	0	copy fasta	ANXA11	chr10	80145889	80210537
ANXA11_chr10_80145889_80210537	0/0	t0012	5218	6	0	0	6	0	0	copy fasta	ANXA11	chr10	80145889	80210537
ANXA11_chr10_80145889_80210537	0/0	t0013	5217	5	5	0	0	0	0	copy fasta	ANXA11	chr10	80145889	80210537
ANXA11_chr10_80145889_80210537	0/0	t0014	5217	5	4	1	0	0	0	copy fasta	ANXA11	chr10	80145889	80210537
ANXA11_chr10_80145889_80210537	0/0	t0015	5218	4	0	0	4	0	0	copy fasta	ANXA11	chr10	80145889	80210537
ANXA11_chr10_80145889_80210537	0/0	t0016	5216	4	0	0	4	0	0	copy fasta	ANXA11	chr10	80145889	80210537
ANXA11_chr10_80145889_80210537	0/0	t0017	5218	3	0	0	3	0	0	copy fasta	ANXA11	chr10	80145889	80210537
ANXA11_chr10_80145889_80210537	0/0	t0018	5216	3	2	0	1	0	0	copy fasta	ANXA11	chr10	80145889	80210537
ANXA11_chr10_80145889_80210537	0/0	t0019	5217	3	0	2	0	0	1	copy fasta	ANXA11	chr10	80145889	80210537
ANXA11_chr10_80145889_80210537	0/0	t0020	5217	2	2	0	0	0	0	copy fasta	ANXA11	chr10	80145889	80210537
ANXA11_chr10_80145889_80210537	0/0	t0021	5217	2	0	0	2	0	0	copy fasta	ANXA11	chr10	80145889	80210537
ANXA11_chr10_80145889_80210537	0/0	t0022	5218	2	0	0	0	1	1	copy fasta	ANXA11	chr10	80145889	80210537
ANXA11_chr10_80145889_80210537	1/0	t0023	5217	1	0	0	0	0	0	copy fasta	ANXA11	chr10	80145889	80210537
ANXA11_chr10_80145889_80210537	0/0	t0024	5218	1	0	0	1	0	0	copy fasta	ANXA11	chr10	80145889	80210537
ANXA11_chr10_80145889_80210537	0/0	t0025	5218	1	0	1	0	0	0	copy fasta	ANXA11	chr10	80145889	80210537
ANXA11_chr10_80145889_80210537	0/0	t0026	5217	1	1	0	0	0	0	copy fasta	ANXA11	chr10	80145889	80210537
ANXA11_chr10_80145889_80210537	0/0	t0027	5217	1	0	1	0	0	0	copy fasta	ANXA11	chr10	80145889	80210537
ANXA11_chr10_80145889_80210537	0/0	t0028	5217	1	1	0	0	0	0	copy fasta	ANXA11	chr10	80145889	80210537
ANXA11_chr10_80145889_80210537	0/0	t0029	5218	1	0	1	0	0	0	copy fasta	ANXA11	chr10	80145889	80210537
ANXA11_chr10_80145889_80210537	0/0	t0030	5217	1	0	1	0	0	0	copy fasta	ANXA11	chr10	80145889	80210537
ANXA11_chr10_80145889_80210537	0/0	t0031	5217	1	1	0	0	0	0	copy fasta	ANXA11	chr10	80145889	80210537
ANXA11_chr10_80145889_80210537	0/0	t0032	5218	1	0	0	1	0	0	copy fasta	ANXA11	chr10	80145889	80210537
ANXA11_chr10_80145889_80210537	0/0	t0033	5217	1	1	0	0	0	0	copy fasta	ANXA11	chr10	80145889	80210537
ANXA11_chr10_80145889_80210537	0/0	t0034	5217	1	0	1	0	0	0	copy fasta	ANXA11	chr10	80145889	80210537
ANXA11_chr10_80145889_80210537	0/0	t0035	5217	1	0	0	0	0	1	copy fasta	ANXA11	chr10	80145889	80210537
ANXA11_chr10_80145889_80210537	0/0	t0036	5218	1	1	0	0	0	0	copy fasta	ANXA11	chr10	80145889	80210537
ANXA11_chr10_80145889_80210537	0/0	t0037	5217	1	0	0	1	0	0	copy fasta	ANXA11	chr10	80145889	80210537
ANXA11_chr10_80145889_80210537	0/0	t0038	5217	1	0	0	1	0	0	copy fasta	ANXA11	chr10	80145889	80210537
ANXA11_chr10_80145889_80210537	0/0	t0039	5217	1	0	1	0	0	0	copy fasta	ANXA11	chr10	80145889	80210537
ANXA11_chr10_80145889_80210537	0/0	t0040	5217	1	1	0	0	0	0	copy fasta	ANXA11	chr10	80145889	80210537
ANXA11_chr10_80145889_80210537	0/0	t0041	5217	1	1	0	0	0	0	copy fasta	ANXA11	chr10	80145889	80210537
ANXA11_chr10_80145889_80210537	0/0	t0042	5217	1	0	0	1	0	0	copy fasta	ANXA11	chr10	80145889	80210537