JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
KCNN4_chr19_43761533_43785973	0/0	t0011	673	1	0	0	1	0	0	copy fasta	KCNN4	chr19	43761533	43785973
KCNN4_chr19_43761533_43785973	0/0	t0012	673	1	0	0	1	0	0	copy fasta	KCNN4	chr19	43761533	43785973
KCNN4_chr19_43761533_43785973	0/0	t0013	673	1	1	0	0	0	0	copy fasta	KCNN4	chr19	43761533	43785973
KCNQ1_chr11_2440008_2854105	1/1	t0001	1194	92	47	28	4	5	6	copy fasta	KCNQ1	chr11	2440008	2854105
KCNQ1_chr11_2440008_2854105	0/0	t0002	1194	59	11	4	36	2	6	copy fasta	KCNQ1	chr11	2440008	2854105
KCNQ1_chr11_2440008_2854105	0/0	t0003	1194	19	2	7	2	1	7	copy fasta	KCNQ1	chr11	2440008	2854105
KCNQ1_chr11_2440008_2854105	0/0	t0004	1194	9	7	2	0	0	0	copy fasta	KCNQ1	chr11	2440008	2854105
KCNQ1_chr11_2440008_2854105	0/0	t0005	1193	7	7	0	0	0	0	copy fasta	KCNQ1	chr11	2440008	2854105
KCNQ1_chr11_2440008_2854105	0/0	t0006	1194	6	6	0	0	0	0	copy fasta	KCNQ1	chr11	2440008	2854105
KCNQ1_chr11_2440008_2854105	0/0	t0007	1194	4	4	0	0	0	0	copy fasta	KCNQ1	chr11	2440008	2854105
KCNQ1_chr11_2440008_2854105	0/0	t0008	1194	3	0	3	0	0	0	copy fasta	KCNQ1	chr11	2440008	2854105
KCNQ1_chr11_2440008_2854105	0/0	t0009	1194	2	2	0	0	0	0	copy fasta	KCNQ1	chr11	2440008	2854105
KCNQ1_chr11_2440008_2854105	0/0	t0010	1194	2	2	0	0	0	0	copy fasta	KCNQ1	chr11	2440008	2854105
KCNQ1_chr11_2440008_2854105	0/0	t0011	1194	1	0	0	0	0	1	copy fasta	KCNQ1	chr11	2440008	2854105
KCNQ1_chr11_2440008_2854105	0/0	t0012	1194	1	0	1	0	0	0	copy fasta	KCNQ1	chr11	2440008	2854105
KCNQ1_chr11_2440008_2854105	0/0	t0013	1193	1	1	0	0	0	0	copy fasta	KCNQ1	chr11	2440008	2854105
KCNQ1_chr11_2440008_2854105	0/0	t0014	1194	1	1	0	0	0	0	copy fasta	KCNQ1	chr11	2440008	2854105
KCNQ1_chr11_2440008_2854105	0/0	t0015	1194	1	0	1	0	0	0	copy fasta	KCNQ1	chr11	2440008	2854105
KCNQ2_chr20_63395208_63477655	0/0	t0001	6629	41	1	8	28	1	3	copy fasta	KCNQ2	chr20	63395208	63477655
KCNQ2_chr20_63395208_63477655	0/0	t0002	6629	23	0	9	5	4	5	copy fasta	KCNQ2	chr20	63395208	63477655
KCNQ2_chr20_63395208_63477655	0/0	t0003	6629	20	0	0	20	0	0	copy fasta	KCNQ2	chr20	63395208	63477655
KCNQ2_chr20_63395208_63477655	0/0	t0004	6570	14	6	4	2	2	0	copy fasta	KCNQ2	chr20	63395208	63477655
KCNQ2_chr20_63395208_63477655	0/1	t0005	6629	12	7	3	0	1	0	copy fasta	KCNQ2	chr20	63395208	63477655
KCNQ2_chr20_63395208_63477655	0/0	t0006	6629	12	1	5	2	2	2	copy fasta	KCNQ2	chr20	63395208	63477655
KCNQ2_chr20_63395208_63477655	0/0	t0007	6629	11	0	0	0	0	11	copy fasta	KCNQ2	chr20	63395208	63477655
KCNQ2_chr20_63395208_63477655	0/0	t0008	6629	9	0	4	0	1	4	copy fasta	KCNQ2	chr20	63395208	63477655
KCNQ2_chr20_63395208_63477655	1/0	t0009	6629	8	7	0	0	0	0	copy fasta	KCNQ2	chr20	63395208	63477655
KCNQ2_chr20_63395208_63477655	0/0	t0010	6629	8	1	1	6	0	0	copy fasta	KCNQ2	chr20	63395208	63477655
KCNQ2_chr20_63395208_63477655	0/0	t0011	6629	7	0	3	2	1	1	copy fasta	KCNQ2	chr20	63395208	63477655
KCNQ2_chr20_63395208_63477655	0/0	t0012	6629	6	6	0	0	0	0	copy fasta	KCNQ2	chr20	63395208	63477655
KCNQ2_chr20_63395208_63477655	0/0	t0013	6629	6	0	5	0	0	1	copy fasta	KCNQ2	chr20	63395208	63477655
KCNQ2_chr20_63395208_63477655	0/0	t0014	6570	5	5	0	0	0	0	copy fasta	KCNQ2	chr20	63395208	63477655
KCNQ2_chr20_63395208_63477655	0/0	t0015	6629	5	0	2	0	1	2	copy fasta	KCNQ2	chr20	63395208	63477655
KCNQ2_chr20_63395208_63477655	0/0	t0016	6629	5	0	0	5	0	0	copy fasta	KCNQ2	chr20	63395208	63477655
KCNQ2_chr20_63395208_63477655	0/0	t0017	6629	5	0	0	5	0	0	copy fasta	KCNQ2	chr20	63395208	63477655
KCNQ2_chr20_63395208_63477655	0/0	t0018	6629	4	0	4	0	0	0	copy fasta	KCNQ2	chr20	63395208	63477655
KCNQ2_chr20_63395208_63477655	0/0	t0019	6629	4	4	0	0	0	0	copy fasta	KCNQ2	chr20	63395208	63477655
KCNQ2_chr20_63395208_63477655	0/0	t0020	6629	4	3	1	0	0	0	copy fasta	KCNQ2	chr20	63395208	63477655
KCNQ2_chr20_63395208_63477655	0/0	t0021	6596	4	3	1	0	0	0	copy fasta	KCNQ2	chr20	63395208	63477655
KCNQ2_chr20_63395208_63477655	0/0	t0022	6629	4	0	3	0	0	1	copy fasta	KCNQ2	chr20	63395208	63477655
KCNQ2_chr20_63395208_63477655	0/0	t0023	6629	4	4	0	0	0	0	copy fasta	KCNQ2	chr20	63395208	63477655
KCNQ2_chr20_63395208_63477655	0/0	t0024	6629	3	0	3	0	0	0	copy fasta	KCNQ2	chr20	63395208	63477655
KCNQ2_chr20_63395208_63477655	0/0	t0025	6628	3	2	1	0	0	0	copy fasta	KCNQ2	chr20	63395208	63477655
KCNQ2_chr20_63395208_63477655	0/0	t0026	6629	3	3	0	0	0	0	copy fasta	KCNQ2	chr20	63395208	63477655
KCNQ2_chr20_63395208_63477655	0/0	t0027	6629	3	0	0	2	0	1	copy fasta	KCNQ2	chr20	63395208	63477655
KCNQ2_chr20_63395208_63477655	0/0	t0028	6629	3	0	0	3	0	0	copy fasta	KCNQ2	chr20	63395208	63477655
KCNQ2_chr20_63395208_63477655	0/0	t0029	6629	3	0	0	3	0	0	copy fasta	KCNQ2	chr20	63395208	63477655
KCNQ2_chr20_63395208_63477655	0/0	t0030	6629	2	0	0	2	0	0	copy fasta	KCNQ2	chr20	63395208	63477655
KCNQ2_chr20_63395208_63477655	0/0	t0031	6629	2	0	2	0	0	0	copy fasta	KCNQ2	chr20	63395208	63477655
KCNQ2_chr20_63395208_63477655	0/0	t0032	6629	2	0	0	2	0	0	copy fasta	KCNQ2	chr20	63395208	63477655