JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
KCNQ2_chr20_63395208_63477655	0/0	t0083	6629	1	1	0	0	0	0	copy fasta	KCNQ2	chr20	63395208	63477655
KCNQ2_chr20_63395208_63477655	0/0	t0084	6570	1	1	0	0	0	0	copy fasta	KCNQ2	chr20	63395208	63477655
KCNQ2_chr20_63395208_63477655	0/0	t0085	6629	1	1	0	0	0	0	copy fasta	KCNQ2	chr20	63395208	63477655
KCNQ2_chr20_63395208_63477655	0/0	t0086	6629	1	1	0	0	0	0	copy fasta	KCNQ2	chr20	63395208	63477655
KCNQ2_chr20_63395208_63477655	0/0	t0087	6629	1	1	0	0	0	0	copy fasta	KCNQ2	chr20	63395208	63477655
KCNQ2_chr20_63395208_63477655	0/0	t0088	6570	1	1	0	0	0	0	copy fasta	KCNQ2	chr20	63395208	63477655
KCNQ2_chr20_63395208_63477655	0/0	t0089	6629	1	1	0	0	0	0	copy fasta	KCNQ2	chr20	63395208	63477655
KCNQ2_chr20_63395208_63477655	0/0	t0090	6570	1	1	0	0	0	0	copy fasta	KCNQ2	chr20	63395208	63477655
KCNQ2_chr20_63395208_63477655	0/0	t0091	6629	1	0	0	0	0	1	copy fasta	KCNQ2	chr20	63395208	63477655
KCNQ2_chr20_63395208_63477655	0/0	t0092	6629	1	0	0	0	0	1	copy fasta	KCNQ2	chr20	63395208	63477655
KCNQ2_chr20_63395208_63477655	0/0	t0093	6629	1	0	0	0	0	1	copy fasta	KCNQ2	chr20	63395208	63477655
KCNQ2_chr20_63395208_63477655	0/0	t0094	6629	1	0	0	1	0	0	copy fasta	KCNQ2	chr20	63395208	63477655
KCNQ2_chr20_63395208_63477655	0/0	t0095	6629	1	0	0	1	0	0	copy fasta	KCNQ2	chr20	63395208	63477655
KCNQ2_chr20_63395208_63477655	0/0	t0096	6629	1	0	1	0	0	0	copy fasta	KCNQ2	chr20	63395208	63477655
KCNQ2_chr20_63395208_63477655	0/0	t0097	6630	1	0	0	1	0	0	copy fasta	KCNQ2	chr20	63395208	63477655
KCNQ2_chr20_63395208_63477655	0/0	t0098	6630	1	0	0	1	0	0	copy fasta	KCNQ2	chr20	63395208	63477655
KCNQ2_chr20_63395208_63477655	0/0	t0099	6629	1	0	0	1	0	0	copy fasta	KCNQ2	chr20	63395208	63477655
KCNQ2_chr20_63395208_63477655	0/0	t0100	6629	1	0	0	0	0	1	copy fasta	KCNQ2	chr20	63395208	63477655
KCNQ2_chr20_63395208_63477655	0/0	t0101	6629	1	0	0	1	0	0	copy fasta	KCNQ2	chr20	63395208	63477655
KCNQ2_chr20_63395208_63477655	0/0	t0102	6629	1	0	0	1	0	0	copy fasta	KCNQ2	chr20	63395208	63477655
KCNQ2_chr20_63395208_63477655	0/0	t0103	6629	1	0	1	0	0	0	copy fasta	KCNQ2	chr20	63395208	63477655
KCNQ2_chr20_63395208_63477655	0/0	t0104	6629	1	0	0	0	0	1	copy fasta	KCNQ2	chr20	63395208	63477655
KCNQ2_chr20_63395208_63477655	0/0	t0105	6629	1	0	0	1	0	0	copy fasta	KCNQ2	chr20	63395208	63477655
KCNQ2_chr20_63395208_63477655	0/0	t0106	6629	1	0	0	1	0	0	copy fasta	KCNQ2	chr20	63395208	63477655
KCNQ2_chr20_63395208_63477655	0/0	t0107	6629	1	0	0	1	0	0	copy fasta	KCNQ2	chr20	63395208	63477655
KCNQ2_chr20_63395208_63477655	0/0	t0108	6629	1	0	0	1	0	0	copy fasta	KCNQ2	chr20	63395208	63477655
KCNQ2_chr20_63395208_63477655	0/0	t0109	6629	1	0	0	1	0	0	copy fasta	KCNQ2	chr20	63395208	63477655
KCNQ2_chr20_63395208_63477655	0/0	t0110	6570	1	0	0	0	1	0	copy fasta	KCNQ2	chr20	63395208	63477655
KCNQ3_chr8_132115861_132486095	0/0	t0001	8963	11	0	3	8	0	0	copy fasta	KCNQ3	chr8	132115861	132486095
KCNQ3_chr8_132115861_132486095	0/0	t0002	8963	5	0	2	3	0	0	copy fasta	KCNQ3	chr8	132115861	132486095
KCNQ3_chr8_132115861_132486095	0/0	t0003	8971	5	1	1	0	1	2	copy fasta	KCNQ3	chr8	132115861	132486095
KCNQ3_chr8_132115861_132486095	0/0	t0004	8965	4	4	0	0	0	0	copy fasta	KCNQ3	chr8	132115861	132486095
KCNQ3_chr8_132115861_132486095	0/0	t0005	8969	4	0	1	2	0	1	copy fasta	KCNQ3	chr8	132115861	132486095
KCNQ3_chr8_132115861_132486095	0/0	t0006	8963	4	0	2	2	0	0	copy fasta	KCNQ3	chr8	132115861	132486095
KCNQ3_chr8_132115861_132486095	0/0	t0007	8963	4	0	1	1	0	2	copy fasta	KCNQ3	chr8	132115861	132486095
KCNQ3_chr8_132115861_132486095	0/0	t0008	8969	3	0	0	3	0	0	copy fasta	KCNQ3	chr8	132115861	132486095
KCNQ3_chr8_132115861_132486095	0/0	t0009	8968	3	0	0	3	0	0	copy fasta	KCNQ3	chr8	132115861	132486095
KCNQ3_chr8_132115861_132486095	0/0	t0010	8965	3	1	0	1	0	1	copy fasta	KCNQ3	chr8	132115861	132486095
KCNQ3_chr8_132115861_132486095	0/0	t0011	8963	3	0	2	1	0	0	copy fasta	KCNQ3	chr8	132115861	132486095
KCNQ3_chr8_132115861_132486095	0/0	t0012	8963	3	3	0	0	0	0	copy fasta	KCNQ3	chr8	132115861	132486095
KCNQ3_chr8_132115861_132486095	0/0	t0013	8971	3	1	1	0	0	1	copy fasta	KCNQ3	chr8	132115861	132486095
KCNQ3_chr8_132115861_132486095	0/0	t0014	8966	3	0	2	1	0	0	copy fasta	KCNQ3	chr8	132115861	132486095
KCNQ3_chr8_132115861_132486095	0/0	t0015	8965	3	0	0	3	0	0	copy fasta	KCNQ3	chr8	132115861	132486095
KCNQ3_chr8_132115861_132486095	0/0	t0016	8966	3	0	0	1	0	2	copy fasta	KCNQ3	chr8	132115861	132486095
KCNQ3_chr8_132115861_132486095	0/0	t0017	8972	3	1	1	1	0	0	copy fasta	KCNQ3	chr8	132115861	132486095
KCNQ3_chr8_132115861_132486095	0/0	t0018	8961	2	2	0	0	0	0	copy fasta	KCNQ3	chr8	132115861	132486095
KCNQ3_chr8_132115861_132486095	0/0	t0019	8965	2	2	0	0	0	0	copy fasta	KCNQ3	chr8	132115861	132486095
KCNQ3_chr8_132115861_132486095	0/0	t0020	8968	2	2	0	0	0	0	copy fasta	KCNQ3	chr8	132115861	132486095
KCNQ3_chr8_132115861_132486095	0/0	t0021	8965	2	2	0	0	0	0	copy fasta	KCNQ3	chr8	132115861	132486095
KCNQ3_chr8_132115861_132486095	0/0	t0022	8949	2	2	0	0	0	0	copy fasta	KCNQ3	chr8	132115861	132486095