JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	SAS	tseq	genename	chr	start	end
KCNQ3_chr8_132115861_132486095	0/0	t0023	8965	2	2	0	0	0	copy fasta	KCNQ3	chr8	132115861	132486095
KCNQ3_chr8_132115861_132486095	0/0	t0024	8969	2	2	0	0	0	copy fasta	KCNQ3	chr8	132115861	132486095
KCNQ3_chr8_132115861_132486095	0/0	t0025	8960	2	2	0	0	0	copy fasta	KCNQ3	chr8	132115861	132486095
KCNQ3_chr8_132115861_132486095	0/0	t0026	8961	2	2	0	0	0	copy fasta	KCNQ3	chr8	132115861	132486095
KCNQ3_chr8_132115861_132486095	0/0	t0027	8958	2	2	0	0	0	copy fasta	KCNQ3	chr8	132115861	132486095
KCNQ3_chr8_132115861_132486095	0/0	t0028	8963	2	0	1	0	1	copy fasta	KCNQ3	chr8	132115861	132486095
KCNQ3_chr8_132115861_132486095	0/0	t0029	8968	2	1	0	0	1	copy fasta	KCNQ3	chr8	132115861	132486095
KCNQ3_chr8_132115861_132486095	0/0	t0030	8967	2	0	0	0	2	copy fasta	KCNQ3	chr8	132115861	132486095
KCNQ3_chr8_132115861_132486095	0/0	t0031	8965	2	0	0	0	2	copy fasta	KCNQ3	chr8	132115861	132486095
KCNQ3_chr8_132115861_132486095	0/0	t0032	8963	1	0	0	0	1	copy fasta	KCNQ3	chr8	132115861	132486095
KCNQ3_chr8_132115861_132486095	0/0	t0033	8965	1	1	0	0	0	copy fasta	KCNQ3	chr8	132115861	132486095
KCNQ3_chr8_132115861_132486095	0/0	t0034	8965	1	0	0	1	0	copy fasta	KCNQ3	chr8	132115861	132486095
KCNQ3_chr8_132115861_132486095	0/0	t0035	8965	1	0	0	1	0	copy fasta	KCNQ3	chr8	132115861	132486095
KCNQ3_chr8_132115861_132486095	0/0	t0036	8975	1	1	0	0	0	copy fasta	KCNQ3	chr8	132115861	132486095
KCNQ3_chr8_132115861_132486095	0/0	t0037	8965	1	0	0	1	0	copy fasta	KCNQ3	chr8	132115861	132486095
KCNQ3_chr8_132115861_132486095	0/0	t0038	8965	1	0	1	0	0	copy fasta	KCNQ3	chr8	132115861	132486095
KCNQ3_chr8_132115861_132486095	0/0	t0039	8965	1	0	0	1	0	copy fasta	KCNQ3	chr8	132115861	132486095
KCNQ3_chr8_132115861_132486095	0/0	t0040	8968	1	0	0	0	1	copy fasta	KCNQ3	chr8	132115861	132486095
KCNQ3_chr8_132115861_132486095	0/0	t0041	8960	1	1	0	0	0	copy fasta	KCNQ3	chr8	132115861	132486095
KCNQ3_chr8_132115861_132486095	0/0	t0042	8965	1	0	0	1	0	copy fasta	KCNQ3	chr8	132115861	132486095
KCNQ3_chr8_132115861_132486095	0/0	t0043	8961	1	1	0	0	0	copy fasta	KCNQ3	chr8	132115861	132486095
KCNQ3_chr8_132115861_132486095	0/0	t0044	8963	1	1	0	0	0	copy fasta	KCNQ3	chr8	132115861	132486095
KCNQ3_chr8_132115861_132486095	0/0	t0045	8965	1	0	1	0	0	copy fasta	KCNQ3	chr8	132115861	132486095
KCNQ3_chr8_132115861_132486095	0/0	t0046	8971	1	1	0	0	0	copy fasta	KCNQ3	chr8	132115861	132486095
KCNQ3_chr8_132115861_132486095	0/0	t0047	8964	1	1	0	0	0	copy fasta	KCNQ3	chr8	132115861	132486095
KCNQ3_chr8_132115861_132486095	0/0	t0048	8960	1	1	0	0	0	copy fasta	KCNQ3	chr8	132115861	132486095
KCNQ3_chr8_132115861_132486095	0/0	t0049	8963	1	1	0	0	0	copy fasta	KCNQ3	chr8	132115861	132486095
KCNQ3_chr8_132115861_132486095	0/0	t0050	8955	1	1	0	0	0	copy fasta	KCNQ3	chr8	132115861	132486095
KCNQ3_chr8_132115861_132486095	0/0	t0051	8961	1	1	0	0	0	copy fasta	KCNQ3	chr8	132115861	132486095
KCNQ3_chr8_132115861_132486095	0/0	t0052	8969	1	1	0	0	0	copy fasta	KCNQ3	chr8	132115861	132486095
KCNQ3_chr8_132115861_132486095	0/0	t0053	8972	1	1	0	0	0	copy fasta	KCNQ3	chr8	132115861	132486095
KCNQ3_chr8_132115861_132486095	0/0	t0054	8972	1	1	0	0	0	copy fasta	KCNQ3	chr8	132115861	132486095
KCNQ3_chr8_132115861_132486095	0/0	t0055	8963	1	1	0	0	0	copy fasta	KCNQ3	chr8	132115861	132486095
KCNQ3_chr8_132115861_132486095	0/0	t0056	8969	1	1	0	0	0	copy fasta	KCNQ3	chr8	132115861	132486095
KCNQ3_chr8_132115861_132486095	0/0	t0057	8959	1	1	0	0	0	copy fasta	KCNQ3	chr8	132115861	132486095
KCNQ3_chr8_132115861_132486095	0/0	t0058	8965	1	1	0	0	0	copy fasta	KCNQ3	chr8	132115861	132486095
KCNQ3_chr8_132115861_132486095	0/0	t0059	8985	1	1	0	0	0	copy fasta	KCNQ3	chr8	132115861	132486095
KCNQ3_chr8_132115861_132486095	0/0	t0060	8973	1	1	0	0	0	copy fasta	KCNQ3	chr8	132115861	132486095
KCNQ3_chr8_132115861_132486095	0/0	t0061	8977	1	1	0	0	0	copy fasta	KCNQ3	chr8	132115861	132486095
KCNQ3_chr8_132115861_132486095	0/0	t0062	8971	1	1	0	0	0	copy fasta	KCNQ3	chr8	132115861	132486095
KCNQ3_chr8_132115861_132486095	0/0	t0063	8969	1	1	0	0	0	copy fasta	KCNQ3	chr8	132115861	132486095
KCNQ3_chr8_132115861_132486095	0/0	t0064	8969	1	1	0	0	0	copy fasta	KCNQ3	chr8	132115861	132486095
KCNQ3_chr8_132115861_132486095	0/0	t0065	8973	1	0	0	0	1	copy fasta	KCNQ3	chr8	132115861	132486095
KCNQ3_chr8_132115861_132486095	0/0	t0066	8967	1	1	0	0	0	copy fasta	KCNQ3	chr8	132115861	132486095
KCNQ3_chr8_132115861_132486095	0/0	t0067	8966	1	1	0	0	0	copy fasta	KCNQ3	chr8	132115861	132486095
KCNQ3_chr8_132115861_132486095	0/0	t0068	8965	1	1	0	0	0	copy fasta	KCNQ3	chr8	132115861	132486095
KCNQ3_chr8_132115861_132486095	0/0	t0069	8965	1	0	0	1	0	copy fasta	KCNQ3	chr8	132115861	132486095
KCNQ3_chr8_132115861_132486095	0/0	t0070	8969	1	1	0	0	0	copy fasta	KCNQ3	chr8	132115861	132486095
KCNQ3_chr8_132115861_132486095	0/0	t0071	8962	1	1	0	0	0	copy fasta	KCNQ3	chr8	132115861	132486095
KCNQ3_chr8_132115861_132486095	0/0	t0072	8967	1	1	0	0	0	copy fasta	KCNQ3	chr8	132115861	132486095