JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
KCNQ3_chr8_132115861_132486095	0/0	t0073	8970	1	1	0	0	0	0	copy fasta	KCNQ3	chr8	132115861	132486095
KCNQ3_chr8_132115861_132486095	0/0	t0074	8965	1	1	0	0	0	0	copy fasta	KCNQ3	chr8	132115861	132486095
KCNQ3_chr8_132115861_132486095	0/0	t0075	8971	1	0	0	0	0	1	copy fasta	KCNQ3	chr8	132115861	132486095
KCNQ3_chr8_132115861_132486095	0/0	t0076	8965	1	1	0	0	0	0	copy fasta	KCNQ3	chr8	132115861	132486095
KCNQ3_chr8_132115861_132486095	0/0	t0077	8963	1	0	1	0	0	0	copy fasta	KCNQ3	chr8	132115861	132486095
KCNQ3_chr8_132115861_132486095	0/0	t0078	8975	1	0	1	0	0	0	copy fasta	KCNQ3	chr8	132115861	132486095
KCNQ3_chr8_132115861_132486095	0/0	t0079	8971	1	0	0	1	0	0	copy fasta	KCNQ3	chr8	132115861	132486095
KCNQ3_chr8_132115861_132486095	0/0	t0080	8973	1	0	1	0	0	0	copy fasta	KCNQ3	chr8	132115861	132486095
KCNQ3_chr8_132115861_132486095	0/0	t0081	8965	1	0	0	1	0	0	copy fasta	KCNQ3	chr8	132115861	132486095
KCNQ3_chr8_132115861_132486095	0/0	t0082	8965	1	0	0	0	1	0	copy fasta	KCNQ3	chr8	132115861	132486095
KCNQ3_chr8_132115861_132486095	0/0	t0083	8963	1	0	0	1	0	0	copy fasta	KCNQ3	chr8	132115861	132486095
KCNQ3_chr8_132115861_132486095	0/0	t0084	8965	1	1	0	0	0	0	copy fasta	KCNQ3	chr8	132115861	132486095
KCNQ3_chr8_132115861_132486095	0/0	t0085	8965	1	1	0	0	0	0	copy fasta	KCNQ3	chr8	132115861	132486095
KCNQ3_chr8_132115861_132486095	0/0	t0086	8973	1	0	0	0	0	1	copy fasta	KCNQ3	chr8	132115861	132486095
KCNQ3_chr8_132115861_132486095	0/0	t0087	8969	1	0	0	0	0	1	copy fasta	KCNQ3	chr8	132115861	132486095
KCNQ3_chr8_132115861_132486095	0/0	t0088	8966	1	0	0	1	0	0	copy fasta	KCNQ3	chr8	132115861	132486095
KCNQ3_chr8_132115861_132486095	0/0	t0089	8976	1	0	1	0	0	0	copy fasta	KCNQ3	chr8	132115861	132486095
KCNQ3_chr8_132115861_132486095	0/0	t0090	8968	1	1	0	0	0	0	copy fasta	KCNQ3	chr8	132115861	132486095
KCNQ3_chr8_132115861_132486095	0/0	t0091	8968	1	1	0	0	0	0	copy fasta	KCNQ3	chr8	132115861	132486095
KCNQ3_chr8_132115861_132486095	0/0	t0092	8971	1	0	0	0	0	1	copy fasta	KCNQ3	chr8	132115861	132486095
KCNQ3_chr8_132115861_132486095	0/0	t0093	8968	1	1	0	0	0	0	copy fasta	KCNQ3	chr8	132115861	132486095
KCNQ3_chr8_132115861_132486095	0/0	t0094	8974	1	0	1	0	0	0	copy fasta	KCNQ3	chr8	132115861	132486095
KCNQ3_chr8_132115861_132486095	0/0	t0095	8965	1	0	0	0	0	1	copy fasta	KCNQ3	chr8	132115861	132486095
KCNQ3_chr8_132115861_132486095	0/0	t0096	8965	1	0	0	0	0	1	copy fasta	KCNQ3	chr8	132115861	132486095
KCNQ3_chr8_132115861_132486095	0/0	t0097	8979	1	1	0	0	0	0	copy fasta	KCNQ3	chr8	132115861	132486095
KCNQ3_chr8_132115861_132486095	0/0	t0098	8979	1	1	0	0	0	0	copy fasta	KCNQ3	chr8	132115861	132486095
KCNQ3_chr8_132115861_132486095	0/0	t0099	8975	1	0	1	0	0	0	copy fasta	KCNQ3	chr8	132115861	132486095
KCNQ3_chr8_132115861_132486095	0/0	t0100	8968	1	0	0	0	0	1	copy fasta	KCNQ3	chr8	132115861	132486095
KCNQ3_chr8_132115861_132486095	0/0	t0101	8967	1	0	0	1	0	0	copy fasta	KCNQ3	chr8	132115861	132486095
KCNQ3_chr8_132115861_132486095	0/0	t0102	8967	1	0	0	1	0	0	copy fasta	KCNQ3	chr8	132115861	132486095
KCNQ3_chr8_132115861_132486095	0/0	t0103	8963	1	1	0	0	0	0	copy fasta	KCNQ3	chr8	132115861	132486095
KCNQ3_chr8_132115861_132486095	0/0	t0104	8965	1	1	0	0	0	0	copy fasta	KCNQ3	chr8	132115861	132486095
KCNQ3_chr8_132115861_132486095	0/0	t0105	8965	1	0	0	1	0	0	copy fasta	KCNQ3	chr8	132115861	132486095
KCNQ3_chr8_132115861_132486095	0/0	t0106	8963	1	0	0	0	0	1	copy fasta	KCNQ3	chr8	132115861	132486095
KCNQ3_chr8_132115861_132486095	0/0	t0107	8968	1	0	1	0	0	0	copy fasta	KCNQ3	chr8	132115861	132486095
KCNQ3_chr8_132115861_132486095	0/0	t0108	8973	1	0	1	0	0	0	copy fasta	KCNQ3	chr8	132115861	132486095
KCNQ3_chr8_132115861_132486095	0/0	t0109	8973	1	0	1	0	0	0	copy fasta	KCNQ3	chr8	132115861	132486095
KCNQ3_chr8_132115861_132486095	0/0	t0110	8967	1	0	0	0	0	1	copy fasta	KCNQ3	chr8	132115861	132486095
KCNQ3_chr8_132115861_132486095	0/0	t0111	8963	1	0	0	1	0	0	copy fasta	KCNQ3	chr8	132115861	132486095
KCNQ3_chr8_132115861_132486095	0/0	t0112	8965	1	0	0	0	0	1	copy fasta	KCNQ3	chr8	132115861	132486095
KCNQ4_chr1_40778787_40845452	0/1	t0001	2237	239	65	35	98	11	29	copy fasta	KCNQ4	chr1	40778787	40845452
KCNQ4_chr1_40778787_40845452	1/0	t0002	2237	50	6	16	11	2	14	copy fasta	KCNQ4	chr1	40778787	40845452
KCNQ4_chr1_40778787_40845452	0/0	t0003	2237	40	4	16	14	3	3	copy fasta	KCNQ4	chr1	40778787	40845452
KCNQ4_chr1_40778787_40845452	0/0	t0004	2233	18	0	0	18	0	0	copy fasta	KCNQ4	chr1	40778787	40845452
KCNQ4_chr1_40778787_40845452	0/0	t0005	2237	6	0	4	0	2	0	copy fasta	KCNQ4	chr1	40778787	40845452
KCNQ4_chr1_40778787_40845452	0/0	t0006	2236	3	3	0	0	0	0	copy fasta	KCNQ4	chr1	40778787	40845452
KCNQ4_chr1_40778787_40845452	0/0	t0007	2237	2	0	0	2	0	0	copy fasta	KCNQ4	chr1	40778787	40845452
KCNQ4_chr1_40778787_40845452	0/0	t0008	2237	2	0	0	0	0	2	copy fasta	KCNQ4	chr1	40778787	40845452
KCNQ4_chr1_40778787_40845452	0/0	t0009	2237	1	0	0	1	0	0	copy fasta	KCNQ4	chr1	40778787	40845452
KCNQ4_chr1_40778787_40845452	0/0	t0010	2237	1	1	0	0	0	0	copy fasta	KCNQ4	chr1	40778787	40845452