JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
KCNQ4_chr1_40778787_40845452	0/0	t0011	2237	1	0	0	1	0	0	copy fasta	KCNQ4	chr1	40778787	40845452
KCNQ4_chr1_40778787_40845452	0/0	t0012	2237	1	1	0	0	0	0	copy fasta	KCNQ4	chr1	40778787	40845452
KCNQ4_chr1_40778787_40845452	0/0	t0013	2224	1	1	0	0	0	0	copy fasta	KCNQ4	chr1	40778787	40845452
KCNQ4_chr1_40778787_40845452	0/0	t0014	2237	1	1	0	0	0	0	copy fasta	KCNQ4	chr1	40778787	40845452
KCNQ4_chr1_40778787_40845452	0/0	t0015	2237	1	1	0	0	0	0	copy fasta	KCNQ4	chr1	40778787	40845452
KCNQ4_chr1_40778787_40845452	0/0	t0016	2237	1	1	0	0	0	0	copy fasta	KCNQ4	chr1	40778787	40845452
KCNQ4_chr1_40778787_40845452	0/0	t0017	2237	1	1	0	0	0	0	copy fasta	KCNQ4	chr1	40778787	40845452
KCNQ4_chr1_40778787_40845452	0/0	t0018	2237	1	0	1	0	0	0	copy fasta	KCNQ4	chr1	40778787	40845452
KCNQ4_chr1_40778787_40845452	0/0	t0019	2237	1	1	0	0	0	0	copy fasta	KCNQ4	chr1	40778787	40845452
KCNQ4_chr1_40778787_40845452	0/0	t0020	2237	1	0	0	1	0	0	copy fasta	KCNQ4	chr1	40778787	40845452
KCNQ5_chr6_72617064_73203853	0/0	t0001	3560	8	1	2	5	0	0	copy fasta	KCNQ5	chr6	72617064	73203853
KCNQ5_chr6_72617064_73203853	0/0	t0002	3558	8	5	0	3	0	0	copy fasta	KCNQ5	chr6	72617064	73203853
KCNQ5_chr6_72617064_73203853	0/0	t0003	3562	6	4	1	1	0	0	copy fasta	KCNQ5	chr6	72617064	73203853
KCNQ5_chr6_72617064_73203853	0/0	t0004	3556	5	4	0	1	0	0	copy fasta	KCNQ5	chr6	72617064	73203853
KCNQ5_chr6_72617064_73203853	0/0	t0005	3548	5	1	1	3	0	0	copy fasta	KCNQ5	chr6	72617064	73203853
KCNQ5_chr6_72617064_73203853	0/0	t0006	3566	3	1	1	1	0	0	copy fasta	KCNQ5	chr6	72617064	73203853
KCNQ5_chr6_72617064_73203853	0/0	t0007	3564	3	0	1	1	0	1	copy fasta	KCNQ5	chr6	72617064	73203853
KCNQ5_chr6_72617064_73203853	0/0	t0008	3544	3	3	0	0	0	0	copy fasta	KCNQ5	chr6	72617064	73203853
KCNQ5_chr6_72617064_73203853	0/0	t0009	3554	3	3	0	0	0	0	copy fasta	KCNQ5	chr6	72617064	73203853
KCNQ5_chr6_72617064_73203853	0/0	t0010	3550	3	1	0	2	0	0	copy fasta	KCNQ5	chr6	72617064	73203853
KCNQ5_chr6_72617064_73203853	0/0	t0011	3568	2	1	1	0	0	0	copy fasta	KCNQ5	chr6	72617064	73203853
KCNQ5_chr6_72617064_73203853	0/0	t0012	3554	2	2	0	0	0	0	copy fasta	KCNQ5	chr6	72617064	73203853
KCNQ5_chr6_72617064_73203853	0/0	t0013	3556	2	2	0	0	0	0	copy fasta	KCNQ5	chr6	72617064	73203853
KCNQ5_chr6_72617064_73203853	0/0	t0014	3548	2	2	0	0	0	0	copy fasta	KCNQ5	chr6	72617064	73203853
KCNQ5_chr6_72617064_73203853	0/0	t0015	3564	1	1	0	0	0	0	copy fasta	KCNQ5	chr6	72617064	73203853
KCNQ5_chr6_72617064_73203853	0/0	t0016	3556	1	0	0	1	0	0	copy fasta	KCNQ5	chr6	72617064	73203853
KCNQ5_chr6_72617064_73203853	0/0	t0017	3550	1	1	0	0	0	0	copy fasta	KCNQ5	chr6	72617064	73203853
KCNQ5_chr6_72617064_73203853	0/0	t0018	3548	1	1	0	0	0	0	copy fasta	KCNQ5	chr6	72617064	73203853
KCNQ5_chr6_72617064_73203853	0/0	t0019	3564	1	1	0	0	0	0	copy fasta	KCNQ5	chr6	72617064	73203853
KCNQ5_chr6_72617064_73203853	0/0	t0020	3562	1	0	1	0	0	0	copy fasta	KCNQ5	chr6	72617064	73203853
KCNQ5_chr6_72617064_73203853	0/0	t0021	3560	1	1	0	0	0	0	copy fasta	KCNQ5	chr6	72617064	73203853
KCNQ5_chr6_72617064_73203853	0/0	t0022	3554	1	1	0	0	0	0	copy fasta	KCNQ5	chr6	72617064	73203853
KCNQ5_chr6_72617064_73203853	0/0	t0023	3562	1	1	0	0	0	0	copy fasta	KCNQ5	chr6	72617064	73203853
KCNQ5_chr6_72617064_73203853	0/0	t0024	3550	1	1	0	0	0	0	copy fasta	KCNQ5	chr6	72617064	73203853
KCNQ5_chr6_72617064_73203853	0/0	t0025	3548	1	1	0	0	0	0	copy fasta	KCNQ5	chr6	72617064	73203853
KCNQ5_chr6_72617064_73203853	0/0	t0026	3548	1	0	0	0	0	1	copy fasta	KCNQ5	chr6	72617064	73203853
KCNQ5_chr6_72617064_73203853	0/0	t0027	3564	1	1	0	0	0	0	copy fasta	KCNQ5	chr6	72617064	73203853
KCNQ5_chr6_72617064_73203853	0/0	t0028	3560	1	1	0	0	0	0	copy fasta	KCNQ5	chr6	72617064	73203853
KCNQ5_chr6_72617064_73203853	0/0	t0029	3558	1	1	0	0	0	0	copy fasta	KCNQ5	chr6	72617064	73203853
KCNQ5_chr6_72617064_73203853	0/0	t0030	3554	1	1	0	0	0	0	copy fasta	KCNQ5	chr6	72617064	73203853
KCNQ5_chr6_72617064_73203853	0/0	t0031	3552	1	1	0	0	0	0	copy fasta	KCNQ5	chr6	72617064	73203853
KCNQ5_chr6_72617064_73203853	0/0	t0032	3550	1	1	0	0	0	0	copy fasta	KCNQ5	chr6	72617064	73203853
KCNQ5_chr6_72617064_73203853	0/0	t0033	3548	1	1	0	0	0	0	copy fasta	KCNQ5	chr6	72617064	73203853
KCNQ5_chr6_72617064_73203853	0/0	t0034	3546	1	1	0	0	0	0	copy fasta	KCNQ5	chr6	72617064	73203853
KCNQ5_chr6_72617064_73203853	0/0	t0035	3546	1	0	0	1	0	0	copy fasta	KCNQ5	chr6	72617064	73203853
KCNQ5_chr6_72617064_73203853	0/0	t0036	3540	1	1	0	0	0	0	copy fasta	KCNQ5	chr6	72617064	73203853
KCNQ5_chr6_72617064_73203853	0/0	t0037	3550	1	0	0	1	0	0	copy fasta	KCNQ5	chr6	72617064	73203853
KCNQ5_chr6_72617064_73203853	0/0	t0038	3536	1	0	1	0	0	0	copy fasta	KCNQ5	chr6	72617064	73203853
KCNQ5_chr6_72617064_73203853	0/0	t0039	3556	1	0	1	0	0	0	copy fasta	KCNQ5	chr6	72617064	73203853
KCNRG_chr13_50010444_50025922	1/1	t0001	519	442	92	71	213	16	48	copy fasta	KCNRG	chr13	50010444	50025922