JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
KCNRG_chr13_50010444_50025922	0/0	t0002	519	5	4	1	0	0	0	copy fasta	KCNRG	chr13	50010444	50025922
KCNRG_chr13_50010444_50025922	0/0	t0003	519	1	0	0	1	0	0	copy fasta	KCNRG	chr13	50010444	50025922
KCNS1_chr20_45086214_45106127	0/0	t0001	3867	123	10	29	64	4	16	copy fasta	KCNS1	chr20	45086214	45106127
KCNS1_chr20_45086214_45106127	0/0	t0002	3867	39	25	5	0	5	4	copy fasta	KCNS1	chr20	45086214	45106127
KCNS1_chr20_45086214_45106127	1/0	t0003	3867	30	3	11	12	1	2	copy fasta	KCNS1	chr20	45086214	45106127
KCNS1_chr20_45086214_45106127	0/0	t0004	3867	28	0	1	24	0	3	copy fasta	KCNS1	chr20	45086214	45106127
KCNS1_chr20_45086214_45106127	0/0	t0005	3867	25	0	0	25	0	0	copy fasta	KCNS1	chr20	45086214	45106127
KCNS1_chr20_45086214_45106127	0/0	t0006	3867	19	0	2	14	1	2	copy fasta	KCNS1	chr20	45086214	45106127
KCNS1_chr20_45086214_45106127	0/0	t0007	3867	11	0	9	0	0	2	copy fasta	KCNS1	chr20	45086214	45106127
KCNS1_chr20_45086214_45106127	0/0	t0008	3867	9	0	0	8	0	1	copy fasta	KCNS1	chr20	45086214	45106127
KCNS1_chr20_45086214_45106127	0/0	t0009	3867	8	1	4	0	1	2	copy fasta	KCNS1	chr20	45086214	45106127
KCNS1_chr20_45086214_45106127	0/0	t0010	3867	8	0	1	7	0	0	copy fasta	KCNS1	chr20	45086214	45106127
KCNS1_chr20_45086214_45106127	0/0	t0011	3867	8	8	0	0	0	0	copy fasta	KCNS1	chr20	45086214	45106127
KCNS1_chr20_45086214_45106127	0/0	t0012	3867	7	6	1	0	0	0	copy fasta	KCNS1	chr20	45086214	45106127
KCNS1_chr20_45086214_45106127	0/0	t0013	3867	7	0	0	7	0	0	copy fasta	KCNS1	chr20	45086214	45106127
KCNS1_chr20_45086214_45106127	0/0	t0014	3867	6	6	0	0	0	0	copy fasta	KCNS1	chr20	45086214	45106127
KCNS1_chr20_45086214_45106127	0/0	t0015	3867	6	0	0	5	0	1	copy fasta	KCNS1	chr20	45086214	45106127
KCNS1_chr20_45086214_45106127	0/0	t0016	3866	5	3	1	0	0	1	copy fasta	KCNS1	chr20	45086214	45106127
KCNS1_chr20_45086214_45106127	0/0	t0017	3866	5	0	2	0	2	1	copy fasta	KCNS1	chr20	45086214	45106127
KCNS1_chr20_45086214_45106127	0/0	t0018	3866	4	0	2	0	1	1	copy fasta	KCNS1	chr20	45086214	45106127
KCNS1_chr20_45086214_45106127	0/0	t0019	3867	3	0	0	3	0	0	copy fasta	KCNS1	chr20	45086214	45106127
KCNS1_chr20_45086214_45106127	0/0	t0020	3866	3	0	0	0	0	3	copy fasta	KCNS1	chr20	45086214	45106127
KCNS1_chr20_45086214_45106127	0/0	t0021	3867	3	3	0	0	0	0	copy fasta	KCNS1	chr20	45086214	45106127
KCNS1_chr20_45086214_45106127	0/0	t0022	3867	3	0	1	0	0	2	copy fasta	KCNS1	chr20	45086214	45106127
KCNS1_chr20_45086214_45106127	0/1	t0023	3867	3	0	0	0	0	2	copy fasta	KCNS1	chr20	45086214	45106127
KCNS1_chr20_45086214_45106127	0/0	t0024	3866	3	0	0	3	0	0	copy fasta	KCNS1	chr20	45086214	45106127
KCNS1_chr20_45086214_45106127	0/0	t0025	3866	3	0	0	0	0	3	copy fasta	KCNS1	chr20	45086214	45106127
KCNS1_chr20_45086214_45106127	0/0	t0026	3867	3	3	0	0	0	0	copy fasta	KCNS1	chr20	45086214	45106127
KCNS1_chr20_45086214_45106127	0/0	t0027	3867	2	2	0	0	0	0	copy fasta	KCNS1	chr20	45086214	45106127
KCNS1_chr20_45086214_45106127	0/0	t0028	3867	2	1	1	0	0	0	copy fasta	KCNS1	chr20	45086214	45106127
KCNS1_chr20_45086214_45106127	0/0	t0029	3866	2	1	1	0	0	0	copy fasta	KCNS1	chr20	45086214	45106127
KCNS1_chr20_45086214_45106127	0/0	t0030	3867	2	0	0	0	0	2	copy fasta	KCNS1	chr20	45086214	45106127
KCNS1_chr20_45086214_45106127	0/0	t0031	3867	2	2	0	0	0	0	copy fasta	KCNS1	chr20	45086214	45106127
KCNS1_chr20_45086214_45106127	0/0	t0032	3867	2	2	0	0	0	0	copy fasta	KCNS1	chr20	45086214	45106127
KCNS1_chr20_45086214_45106127	0/0	t0033	3867	2	0	0	2	0	0	copy fasta	KCNS1	chr20	45086214	45106127
KCNS1_chr20_45086214_45106127	0/0	t0034	3867	2	0	0	2	0	0	copy fasta	KCNS1	chr20	45086214	45106127
KCNS1_chr20_45086214_45106127	0/0	t0035	3867	2	2	0	0	0	0	copy fasta	KCNS1	chr20	45086214	45106127
KCNS1_chr20_45086214_45106127	0/0	t0036	3868	2	2	0	0	0	0	copy fasta	KCNS1	chr20	45086214	45106127
KCNS1_chr20_45086214_45106127	0/0	t0037	3866	2	0	0	2	0	0	copy fasta	KCNS1	chr20	45086214	45106127
KCNS1_chr20_45086214_45106127	0/0	t0038	3866	2	1	0	1	0	0	copy fasta	KCNS1	chr20	45086214	45106127
KCNS1_chr20_45086214_45106127	0/0	t0039	3867	1	0	1	0	0	0	copy fasta	KCNS1	chr20	45086214	45106127
KCNS1_chr20_45086214_45106127	0/0	t0040	3866	1	1	0	0	0	0	copy fasta	KCNS1	chr20	45086214	45106127
KCNS1_chr20_45086214_45106127	0/0	t0041	3867	1	1	0	0	0	0	copy fasta	KCNS1	chr20	45086214	45106127
KCNS1_chr20_45086214_45106127	0/0	t0042	3866	1	1	0	0	0	0	copy fasta	KCNS1	chr20	45086214	45106127
KCNS1_chr20_45086214_45106127	0/0	t0043	3867	1	0	0	1	0	0	copy fasta	KCNS1	chr20	45086214	45106127
KCNS1_chr20_45086214_45106127	0/0	t0044	3866	1	0	1	0	0	0	copy fasta	KCNS1	chr20	45086214	45106127
KCNS1_chr20_45086214_45106127	0/0	t0045	3866	1	1	0	0	0	0	copy fasta	KCNS1	chr20	45086214	45106127
KCNS1_chr20_45086214_45106127	0/0	t0046	3866	1	1	0	0	0	0	copy fasta	KCNS1	chr20	45086214	45106127
KCNS1_chr20_45086214_45106127	0/0	t0047	3866	1	0	1	0	0	0	copy fasta	KCNS1	chr20	45086214	45106127
KCNS1_chr20_45086214_45106127	0/0	t0048	3866	1	1	0	0	0	0	copy fasta	KCNS1	chr20	45086214	45106127