JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
KCNS1_chr20_45086214_45106127	0/0	t0049	3867	1	0	0	1	0	0	copy fasta	KCNS1	chr20	45086214	45106127
KCNS1_chr20_45086214_45106127	0/0	t0050	3867	1	0	0	1	0	0	copy fasta	KCNS1	chr20	45086214	45106127
KCNS1_chr20_45086214_45106127	0/0	t0051	3867	1	0	0	0	1	0	copy fasta	KCNS1	chr20	45086214	45106127
KCNS1_chr20_45086214_45106127	0/0	t0052	3867	1	0	0	1	0	0	copy fasta	KCNS1	chr20	45086214	45106127
KCNS1_chr20_45086214_45106127	0/0	t0053	3867	1	0	0	1	0	0	copy fasta	KCNS1	chr20	45086214	45106127
KCNS1_chr20_45086214_45106127	0/0	t0054	3868	1	0	1	0	0	0	copy fasta	KCNS1	chr20	45086214	45106127
KCNS1_chr20_45086214_45106127	0/0	t0055	3867	1	0	0	1	0	0	copy fasta	KCNS1	chr20	45086214	45106127
KCNS1_chr20_45086214_45106127	0/0	t0056	3867	1	0	1	0	0	0	copy fasta	KCNS1	chr20	45086214	45106127
KCNS1_chr20_45086214_45106127	0/0	t0057	3867	1	1	0	0	0	0	copy fasta	KCNS1	chr20	45086214	45106127
KCNS1_chr20_45086214_45106127	0/0	t0058	3867	1	1	0	0	0	0	copy fasta	KCNS1	chr20	45086214	45106127
KCNS1_chr20_45086214_45106127	0/0	t0059	3867	1	0	0	1	0	0	copy fasta	KCNS1	chr20	45086214	45106127
KCNS1_chr20_45086214_45106127	0/0	t0060	3867	1	0	1	0	0	0	copy fasta	KCNS1	chr20	45086214	45106127
KCNS1_chr20_45086214_45106127	0/0	t0061	3867	1	1	0	0	0	0	copy fasta	KCNS1	chr20	45086214	45106127
KCNS1_chr20_45086214_45106127	0/0	t0062	3867	1	1	0	0	0	0	copy fasta	KCNS1	chr20	45086214	45106127
KCNS1_chr20_45086214_45106127	0/0	t0063	3867	1	1	0	0	0	0	copy fasta	KCNS1	chr20	45086214	45106127
KCNS1_chr20_45086214_45106127	0/0	t0064	3867	1	1	0	0	0	0	copy fasta	KCNS1	chr20	45086214	45106127
KCNS1_chr20_45086214_45106127	0/0	t0065	3867	1	1	0	0	0	0	copy fasta	KCNS1	chr20	45086214	45106127
KCNS1_chr20_45086214_45106127	0/0	t0066	3867	1	1	0	0	0	0	copy fasta	KCNS1	chr20	45086214	45106127
KCNS1_chr20_45086214_45106127	0/0	t0067	3867	1	0	1	0	0	0	copy fasta	KCNS1	chr20	45086214	45106127
KCNS1_chr20_45086214_45106127	0/0	t0068	3866	1	1	0	0	0	0	copy fasta	KCNS1	chr20	45086214	45106127
KCNS2_chr8_98421958_98437853	0/1	t0001	3855	258	25	52	153	8	19	copy fasta	KCNS2	chr8	98421958	98437853
KCNS2_chr8_98421958_98437853	1/0	t0002	3855	64	18	3	31	0	11	copy fasta	KCNS2	chr8	98421958	98437853
KCNS2_chr8_98421958_98437853	0/0	t0003	3858	37	9	4	16	3	5	copy fasta	KCNS2	chr8	98421958	98437853
KCNS2_chr8_98421958_98437853	0/0	t0004	3855	24	5	11	3	3	2	copy fasta	KCNS2	chr8	98421958	98437853
KCNS2_chr8_98421958_98437853	0/0	t0005	3855	13	11	1	0	0	1	copy fasta	KCNS2	chr8	98421958	98437853
KCNS2_chr8_98421958_98437853	0/0	t0006	3855	10	10	0	0	0	0	copy fasta	KCNS2	chr8	98421958	98437853
KCNS2_chr8_98421958_98437853	0/0	t0007	3855	7	7	0	0	0	0	copy fasta	KCNS2	chr8	98421958	98437853
KCNS2_chr8_98421958_98437853	0/0	t0008	3855	4	4	0	0	0	0	copy fasta	KCNS2	chr8	98421958	98437853
KCNS2_chr8_98421958_98437853	0/0	t0009	3855	2	0	1	0	1	0	copy fasta	KCNS2	chr8	98421958	98437853
KCNS2_chr8_98421958_98437853	0/0	t0010	3855	1	1	0	0	0	0	copy fasta	KCNS2	chr8	98421958	98437853
KCNS2_chr8_98421958_98437853	0/0	t0011	3855	1	0	1	0	0	0	copy fasta	KCNS2	chr8	98421958	98437853
KCNS2_chr8_98421958_98437853	0/0	t0012	3855	1	1	0	0	0	0	copy fasta	KCNS2	chr8	98421958	98437853
KCNS2_chr8_98421958_98437853	0/0	t0013	3855	1	1	0	0	0	0	copy fasta	KCNS2	chr8	98421958	98437853
KCNS2_chr8_98421958_98437853	0/0	t0014	3855	1	1	0	0	0	0	copy fasta	KCNS2	chr8	98421958	98437853
KCNS2_chr8_98421958_98437853	0/0	t0015	3855	1	1	0	0	0	0	copy fasta	KCNS2	chr8	98421958	98437853
KCNS2_chr8_98421958_98437853	0/0	t0016	3855	1	0	0	1	0	0	copy fasta	KCNS2	chr8	98421958	98437853
KCNS2_chr8_98421958_98437853	0/0	t0017	3855	1	0	0	0	0	1	copy fasta	KCNS2	chr8	98421958	98437853
KCNS2_chr8_98421958_98437853	0/0	t0018	3855	1	1	0	0	0	0	copy fasta	KCNS2	chr8	98421958	98437853
KCNS2_chr8_98421958_98437853	0/0	t0019	3855	1	0	0	0	1	0	copy fasta	KCNS2	chr8	98421958	98437853
KCNS2_chr8_98421958_98437853	0/0	t0020	3855	1	0	1	0	0	0	copy fasta	KCNS2	chr8	98421958	98437853
KCNS2_chr8_98421958_98437853	0/0	t0021	3855	1	0	0	1	0	0	copy fasta	KCNS2	chr8	98421958	98437853
KCNS2_chr8_98421958_98437853	0/0	t0022	3855	1	0	0	1	0	0	copy fasta	KCNS2	chr8	98421958	98437853
KCNS2_chr8_98421958_98437853	0/0	t0023	3855	1	1	0	0	0	0	copy fasta	KCNS2	chr8	98421958	98437853
KCNS2_chr8_98421958_98437853	0/0	t0024	3855	1	0	0	0	0	1	copy fasta	KCNS2	chr8	98421958	98437853
KCNS2_chr8_98421958_98437853	0/0	t0025	3855	1	1	0	0	0	0	copy fasta	KCNS2	chr8	98421958	98437853
KCNS2_chr8_98421958_98437853	0/0	t0026	3855	1	1	0	0	0	0	copy fasta	KCNS2	chr8	98421958	98437853
KCNS3_chr2_17873667_17937958	1/1	t0001	866	268	64	54	107	12	29	copy fasta	KCNS3	chr2	17873667	17937958
KCNS3_chr2_17873667_17937958	0/0	t0002	866	97	11	13	51	6	16	copy fasta	KCNS3	chr2	17873667	17937958
KCNS3_chr2_17873667_17937958	0/0	t0003	866	10	10	0	0	0	0	copy fasta	KCNS3	chr2	17873667	17937958
KCNS3_chr2_17873667_17937958	0/0	t0004	866	3	0	1	0	0	2	copy fasta	KCNS3	chr2	17873667	17937958