JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
KCNS3_chr2_17873667_17937958	0/0	t0005	866	2	2	0	0	0	0	copy fasta	KCNS3	chr2	17873667	17937958
KCNS3_chr2_17873667_17937958	0/0	t0006	866	1	0	0	0	0	1	copy fasta	KCNS3	chr2	17873667	17937958
KCNS3_chr2_17873667_17937958	0/0	t0007	866	1	1	0	0	0	0	copy fasta	KCNS3	chr2	17873667	17937958
KCNS3_chr2_17873667_17937958	0/0	t0008	866	1	0	0	1	0	0	copy fasta	KCNS3	chr2	17873667	17937958
KCNS3_chr2_17873667_17937958	0/0	t0009	866	1	0	0	1	0	0	copy fasta	KCNS3	chr2	17873667	17937958
KCNT1_chr9_135697185_135800502	1/1	t0001	3416	147	25	40	54	7	19	copy fasta	KCNT1	chr9	135697185	135800502
KCNT1_chr9_135697185_135800502	0/0	t0002	3417	35	9	6	18	2	0	copy fasta	KCNT1	chr9	135697185	135800502
KCNT1_chr9_135697185_135800502	0/0	t0003	3419	13	0	2	0	2	9	copy fasta	KCNT1	chr9	135697185	135800502
KCNT1_chr9_135697185_135800502	0/0	t0004	3416	9	7	1	0	1	0	copy fasta	KCNT1	chr9	135697185	135800502
KCNT1_chr9_135697185_135800502	0/0	t0005	3419	7	4	3	0	0	0	copy fasta	KCNT1	chr9	135697185	135800502
KCNT1_chr9_135697185_135800502	0/0	t0006	3417	5	5	0	0	0	0	copy fasta	KCNT1	chr9	135697185	135800502
KCNT1_chr9_135697185_135800502	0/0	t0007	3417	5	5	0	0	0	0	copy fasta	KCNT1	chr9	135697185	135800502
KCNT1_chr9_135697185_135800502	0/0	t0008	3420	4	4	0	0	0	0	copy fasta	KCNT1	chr9	135697185	135800502
KCNT1_chr9_135697185_135800502	0/0	t0009	3421	4	4	0	0	0	0	copy fasta	KCNT1	chr9	135697185	135800502
KCNT1_chr9_135697185_135800502	0/0	t0010	3417	3	3	0	0	0	0	copy fasta	KCNT1	chr9	135697185	135800502
KCNT1_chr9_135697185_135800502	0/0	t0011	3416	2	0	0	2	0	0	copy fasta	KCNT1	chr9	135697185	135800502
KCNT1_chr9_135697185_135800502	0/0	t0012	3416	2	0	0	2	0	0	copy fasta	KCNT1	chr9	135697185	135800502
KCNT1_chr9_135697185_135800502	0/0	t0013	3416	2	2	0	0	0	0	copy fasta	KCNT1	chr9	135697185	135800502
KCNT1_chr9_135697185_135800502	0/0	t0014	3433	2	2	0	0	0	0	copy fasta	KCNT1	chr9	135697185	135800502
KCNT1_chr9_135697185_135800502	0/0	t0015	3416	2	0	2	0	0	0	copy fasta	KCNT1	chr9	135697185	135800502
KCNT1_chr9_135697185_135800502	0/0	t0016	3419	2	0	0	1	0	1	copy fasta	KCNT1	chr9	135697185	135800502
KCNT1_chr9_135697185_135800502	0/0	t0017	3421	2	2	0	0	0	0	copy fasta	KCNT1	chr9	135697185	135800502
KCNT1_chr9_135697185_135800502	0/0	t0018	3416	1	1	0	0	0	0	copy fasta	KCNT1	chr9	135697185	135800502
KCNT1_chr9_135697185_135800502	0/0	t0019	3420	1	1	0	0	0	0	copy fasta	KCNT1	chr9	135697185	135800502
KCNT1_chr9_135697185_135800502	0/0	t0020	3416	1	1	0	0	0	0	copy fasta	KCNT1	chr9	135697185	135800502
KCNT1_chr9_135697185_135800502	0/0	t0021	3416	1	1	0	0	0	0	copy fasta	KCNT1	chr9	135697185	135800502
KCNT1_chr9_135697185_135800502	0/0	t0022	3417	1	0	0	1	0	0	copy fasta	KCNT1	chr9	135697185	135800502
KCNT1_chr9_135697185_135800502	0/0	t0023	3417	1	1	0	0	0	0	copy fasta	KCNT1	chr9	135697185	135800502
KCNT1_chr9_135697185_135800502	0/0	t0024	3416	1	1	0	0	0	0	copy fasta	KCNT1	chr9	135697185	135800502
KCNT1_chr9_135697185_135800502	0/0	t0025	3432	1	1	0	0	0	0	copy fasta	KCNT1	chr9	135697185	135800502
KCNT1_chr9_135697185_135800502	0/0	t0026	3416	1	0	0	1	0	0	copy fasta	KCNT1	chr9	135697185	135800502
KCNT1_chr9_135697185_135800502	0/0	t0027	3420	1	1	0	0	0	0	copy fasta	KCNT1	chr9	135697185	135800502
KCNT1_chr9_135697185_135800502	0/0	t0028	3416	1	0	0	0	0	1	copy fasta	KCNT1	chr9	135697185	135800502
KCNT1_chr9_135697185_135800502	0/0	t0029	3417	1	0	0	1	0	0	copy fasta	KCNT1	chr9	135697185	135800502
KCNT1_chr9_135697185_135800502	0/0	t0030	3417	1	1	0	0	0	0	copy fasta	KCNT1	chr9	135697185	135800502
KCNT1_chr9_135697185_135800502	0/0	t0031	3416	1	1	0	0	0	0	copy fasta	KCNT1	chr9	135697185	135800502
KCNT1_chr9_135697185_135800502	0/0	t0032	3416	1	0	1	0	0	0	copy fasta	KCNT1	chr9	135697185	135800502
KCNT1_chr9_135697185_135800502	0/0	t0033	3416	1	0	0	0	0	1	copy fasta	KCNT1	chr9	135697185	135800502
KCNT1_chr9_135697185_135800502	0/0	t0034	3416	1	0	0	1	0	0	copy fasta	KCNT1	chr9	135697185	135800502
KCNT1_chr9_135697185_135800502	0/0	t0035	3416	1	0	0	1	0	0	copy fasta	KCNT1	chr9	135697185	135800502
KCNT1_chr9_135697185_135800502	0/0	t0036	3417	1	0	1	0	0	0	copy fasta	KCNT1	chr9	135697185	135800502
KCNT1_chr9_135697185_135800502	0/0	t0037	3416	1	0	1	0	0	0	copy fasta	KCNT1	chr9	135697185	135800502
KCNT1_chr9_135697185_135800502	0/0	t0038	3419	1	0	0	0	0	1	copy fasta	KCNT1	chr9	135697185	135800502
KCNT1_chr9_135697185_135800502	0/0	t0039	3416	1	1	0	0	0	0	copy fasta	KCNT1	chr9	135697185	135800502
KCNT1_chr9_135697185_135800502	0/0	t0040	3419	1	1	0	0	0	0	copy fasta	KCNT1	chr9	135697185	135800502
KCNT1_chr9_135697185_135800502	0/0	t0041	3416	1	0	0	1	0	0	copy fasta	KCNT1	chr9	135697185	135800502
KCNT1_chr9_135697185_135800502	0/0	t0042	3416	1	0	0	1	0	0	copy fasta	KCNT1	chr9	135697185	135800502
KCNT1_chr9_135697185_135800502	0/0	t0043	3416	1	0	1	0	0	0	copy fasta	KCNT1	chr9	135697185	135800502
KCNT2_chr1_196220779_196613440	1/1	t0001	2577	100	59	19	10	3	7	copy fasta	KCNT2	chr1	196220779	196613440
KCNT2_chr1_196220779_196613440	0/0	t0002	2577	20	5	9	2	0	4	copy fasta	KCNT2	chr1	196220779	196613440