JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
KCNT2_chr1_196220779_196613440	0/0	t0003	2577	5	5	0	0	0	0	copy fasta	KCNT2	chr1	196220779	196613440
KCNT2_chr1_196220779_196613440	0/0	t0004	2577	3	0	1	1	1	0	copy fasta	KCNT2	chr1	196220779	196613440
KCNT2_chr1_196220779_196613440	0/0	t0005	2577	2	2	0	0	0	0	copy fasta	KCNT2	chr1	196220779	196613440
KCNT2_chr1_196220779_196613440	0/0	t0006	2577	1	0	1	0	0	0	copy fasta	KCNT2	chr1	196220779	196613440
KCNT2_chr1_196220779_196613440	0/0	t0007	2577	1	0	0	0	0	1	copy fasta	KCNT2	chr1	196220779	196613440
KCNT2_chr1_196220779_196613440	0/0	t0008	2577	1	1	0	0	0	0	copy fasta	KCNT2	chr1	196220779	196613440
KCNT2_chr1_196220779_196613440	0/0	t0009	2577	1	1	0	0	0	0	copy fasta	KCNT2	chr1	196220779	196613440
KCNT2_chr1_196220779_196613440	0/0	t0010	2577	1	1	0	0	0	0	copy fasta	KCNT2	chr1	196220779	196613440
KCNT2_chr1_196220779_196613440	0/0	t0011	2577	1	0	0	1	0	0	copy fasta	KCNT2	chr1	196220779	196613440
KCNU1_chr8_36779374_36941125	1/1	t0001	243	293	70	50	135	12	24	copy fasta	KCNU1	chr8	36779374	36941125
KCNU1_chr8_36779374_36941125	0/0	t0002	243	1	0	0	1	0	0	copy fasta	KCNU1	chr8	36779374	36941125
KCNV1_chr8_109958636_109980771	1/0	t0001	5410	132	12	28	60	9	22	copy fasta	KCNV1	chr8	109958636	109980771
KCNV1_chr8_109958636_109980771	0/0	t0002	5410	107	22	18	52	1	14	copy fasta	KCNV1	chr8	109958636	109980771
KCNV1_chr8_109958636_109980771	0/0	t0003	5411	38	11	1	22	3	1	copy fasta	KCNV1	chr8	109958636	109980771
KCNV1_chr8_109958636_109980771	0/0	t0004	5414	19	16	1	0	1	1	copy fasta	KCNV1	chr8	109958636	109980771
KCNV1_chr8_109958636_109980771	0/0	t0005	5416	7	7	0	0	0	0	copy fasta	KCNV1	chr8	109958636	109980771
KCNV1_chr8_109958636_109980771	0/0	t0006	5410	7	0	0	7	0	0	copy fasta	KCNV1	chr8	109958636	109980771
KCNV1_chr8_109958636_109980771	0/0	t0007	5409	6	6	0	0	0	0	copy fasta	KCNV1	chr8	109958636	109980771
KCNV1_chr8_109958636_109980771	0/0	t0008	5410	5	0	5	0	0	0	copy fasta	KCNV1	chr8	109958636	109980771
KCNV1_chr8_109958636_109980771	0/0	t0009	5410	5	0	0	5	0	0	copy fasta	KCNV1	chr8	109958636	109980771
KCNV1_chr8_109958636_109980771	0/0	t0010	5410	4	0	3	0	0	1	copy fasta	KCNV1	chr8	109958636	109980771
KCNV1_chr8_109958636_109980771	0/0	t0011	5410	3	2	1	0	0	0	copy fasta	KCNV1	chr8	109958636	109980771
KCNV1_chr8_109958636_109980771	0/0	t0012	5410	2	0	0	0	0	2	copy fasta	KCNV1	chr8	109958636	109980771
KCNV1_chr8_109958636_109980771	0/0	t0013	5410	2	0	0	2	0	0	copy fasta	KCNV1	chr8	109958636	109980771
KCNV1_chr8_109958636_109980771	0/0	t0014	5410	2	2	0	0	0	0	copy fasta	KCNV1	chr8	109958636	109980771
KCNV1_chr8_109958636_109980771	0/0	t0015	5410	2	2	0	0	0	0	copy fasta	KCNV1	chr8	109958636	109980771
KCNV1_chr8_109958636_109980771	0/0	t0016	5410	1	0	0	0	0	1	copy fasta	KCNV1	chr8	109958636	109980771
KCNV1_chr8_109958636_109980771	0/0	t0017	5411	1	0	0	1	0	0	copy fasta	KCNV1	chr8	109958636	109980771
KCNV1_chr8_109958636_109980771	0/0	t0018	5410	1	0	1	0	0	0	copy fasta	KCNV1	chr8	109958636	109980771
KCNV1_chr8_109958636_109980771	0/0	t0019	5410	1	1	0	0	0	0	copy fasta	KCNV1	chr8	109958636	109980771
KCNV1_chr8_109958636_109980771	0/0	t0020	5410	1	0	1	0	0	0	copy fasta	KCNV1	chr8	109958636	109980771
KCNV1_chr8_109958636_109980771	0/0	t0021	5410	1	0	0	1	0	0	copy fasta	KCNV1	chr8	109958636	109980771
KCNV1_chr8_109958636_109980771	0/1	t0022	5410	1	0	0	0	0	0	copy fasta	KCNV1	chr8	109958636	109980771
KCNV1_chr8_109958636_109980771	0/0	t0023	5410	1	0	0	1	0	0	copy fasta	KCNV1	chr8	109958636	109980771
KCNV1_chr8_109958636_109980771	0/0	t0024	5415	1	1	0	0	0	0	copy fasta	KCNV1	chr8	109958636	109980771
KCNV1_chr8_109958636_109980771	0/0	t0025	5410	1	1	0	0	0	0	copy fasta	KCNV1	chr8	109958636	109980771
KCNV1_chr8_109958636_109980771	0/0	t0026	5410	1	0	0	1	0	0	copy fasta	KCNV1	chr8	109958636	109980771
KCNV1_chr8_109958636_109980771	0/0	t0027	5414	1	1	0	0	0	0	copy fasta	KCNV1	chr8	109958636	109980771
KCNV1_chr8_109958636_109980771	0/0	t0028	5410	1	0	0	0	0	1	copy fasta	KCNV1	chr8	109958636	109980771
KCNV1_chr8_109958636_109980771	0/0	t0029	5410	1	0	0	1	0	0	copy fasta	KCNV1	chr8	109958636	109980771
KCNV1_chr8_109958636_109980771	0/0	t0030	5410	1	0	0	1	0	0	copy fasta	KCNV1	chr8	109958636	109980771
KCNV1_chr8_109958636_109980771	0/0	t0031	5410	1	0	0	1	0	0	copy fasta	KCNV1	chr8	109958636	109980771
KCNV1_chr8_109958636_109980771	0/0	t0032	5410	1	0	0	1	0	0	copy fasta	KCNV1	chr8	109958636	109980771
KCNV1_chr8_109958636_109980771	0/0	t0033	5411	1	0	0	0	0	1	copy fasta	KCNV1	chr8	109958636	109980771
KCNV1_chr8_109958636_109980771	0/0	t0034	5410	1	0	0	1	0	0	copy fasta	KCNV1	chr8	109958636	109980771
KCNV1_chr8_109958636_109980771	0/0	t0035	5415	1	1	0	0	0	0	copy fasta	KCNV1	chr8	109958636	109980771
KCNV1_chr8_109958636_109980771	0/0	t0036	5414	1	1	0	0	0	0	copy fasta	KCNV1	chr8	109958636	109980771
KCNV1_chr8_109958636_109980771	0/0	t0037	5415	1	0	1	0	0	0	copy fasta	KCNV1	chr8	109958636	109980771
KCNV1_chr8_109958636_109980771	0/0	t0038	5410	1	1	0	0	0	0	copy fasta	KCNV1	chr8	109958636	109980771
KCNV1_chr8_109958636_109980771	0/0	t0039	5409	1	0	1	0	0	0	copy fasta	KCNV1	chr8	109958636	109980771