Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ANXA13_chr8_123675794_123742393	0/0	t0001	506	142	44	29	52	3	14	copy fasta	ANXA13	chr8	123675794	123742393
ANXA13_chr8_123675794_123742393	0/1	t0002	506	120	7	19	78	3	12	copy fasta	ANXA13	chr8	123675794	123742393
ANXA13_chr8_123675794_123742393	0/0	t0003	506	76	23	25	19	3	6	copy fasta	ANXA13	chr8	123675794	123742393
ANXA13_chr8_123675794_123742393	0/0	t0004	506	8	4	2	0	1	1	copy fasta	ANXA13	chr8	123675794	123742393
ANXA13_chr8_123675794_123742393	0/0	t0005	506	6	5	0	1	0	0	copy fasta	ANXA13	chr8	123675794	123742393
ANXA13_chr8_123675794_123742393	0/0	t0006	506	6	2	0	4	0	0	copy fasta	ANXA13	chr8	123675794	123742393
ANXA13_chr8_123675794_123742393	0/0	t0007	506	3	1	0	2	0	0	copy fasta	ANXA13	chr8	123675794	123742393
ANXA13_chr8_123675794_123742393	0/0	t0008	506	3	1	0	0	2	0	copy fasta	ANXA13	chr8	123675794	123742393
ANXA13_chr8_123675794_123742393	1/0	t0009	506	3	0	1	0	0	1	copy fasta	ANXA13	chr8	123675794	123742393
ANXA13_chr8_123675794_123742393	0/0	t0010	506	1	1	0	0	0	0	copy fasta	ANXA13	chr8	123675794	123742393
ANXA13_chr8_123675794_123742393	0/0	t0011	506	1	1	0	0	0	0	copy fasta	ANXA13	chr8	123675794	123742393
ANXA13_chr8_123675794_123742393	0/0	t0012	506	1	1	0	0	0	0	copy fasta	ANXA13	chr8	123675794	123742393
ANXA13_chr8_123675794_123742393	0/0	t0013	506	1	1	0	0	0	0	copy fasta	ANXA13	chr8	123675794	123742393
ANXA13_chr8_123675794_123742393	0/0	t0014	506	1	1	0	0	0	0	copy fasta	ANXA13	chr8	123675794	123742393
ANXA13_chr8_123675794_123742393	0/0	t0015	506	1	1	0	0	0	0	copy fasta	ANXA13	chr8	123675794	123742393
ANXA13_chr8_123675794_123742393	0/0	t0016	506	1	1	0	0	0	0	copy fasta	ANXA13	chr8	123675794	123742393
ANXA1_chr9_73146865_73175393	1/1	t0001	361	357	75	71	152	17	40	copy fasta	ANXA1	chr9	73146865	73175393
ANXA1_chr9_73146865_73175393	0/0	t0002	361	66	15	9	37	1	4	copy fasta	ANXA1	chr9	73146865	73175393
ANXA1_chr9_73146865_73175393	0/0	t0003	361	4	4	0	0	0	0	copy fasta	ANXA1	chr9	73146865	73175393
ANXA1_chr9_73146865_73175393	0/0	t0004	361	1	0	0	1	0	0	copy fasta	ANXA1	chr9	73146865	73175393
ANXA2R_chr5_43034371_43045319	1/1	t0001	368	291	56	60	115	14	44	copy fasta	ANXA2R	chr5	43034371	43045319
ANXA2R_chr5_43034371_43045319	0/0	t0002	368	2	2	0	0	0	0	copy fasta	ANXA2R	chr5	43034371	43045319
ANXA2R_chr5_43034371_43045319	0/0	t0003	368	1	1	0	0	0	0	copy fasta	ANXA2R	chr5	43034371	43045319
ANXA2R_chr5_43034371_43045319	0/0	t0004	368	1	0	0	1	0	0	copy fasta	ANXA2R	chr5	43034371	43045319
ANXA2R_chr5_43034371_43045319	0/0	t0005	368	1	1	0	0	0	0	copy fasta	ANXA2R	chr5	43034371	43045319
ANXA2_chr15_60342151_60402986	1/1	t0001	535	320	76	60	128	12	42	copy fasta	ANXA2	chr15	60342151	60402986
ANXA2_chr15_60342151_60402986	0/0	t0002	535	7	0	7	0	0	0	copy fasta	ANXA2	chr15	60342151	60402986
ANXA2_chr15_60342151_60402986	0/0	t0003	535	4	0	0	4	0	0	copy fasta	ANXA2	chr15	60342151	60402986
ANXA2_chr15_60342151_60402986	0/0	t0004	535	1	1	0	0	0	0	copy fasta	ANXA2	chr15	60342151	60402986
ANXA2_chr15_60342151_60402986	0/0	t0005	535	1	1	0	0	0	0	copy fasta	ANXA2	chr15	60342151	60402986
ANXA2_chr15_60342151_60402986	0/0	t0006	535	1	0	1	0	0	0	copy fasta	ANXA2	chr15	60342151	60402986
ANXA3_chr4_78546770_78615447	0/1	t0001	461	144	30	16	81	3	13	copy fasta	ANXA3	chr4	78546770	78615447
ANXA3_chr4_78546770_78615447	1/0	t0002	461	78	23	26	15	2	11	copy fasta	ANXA3	chr4	78546770	78615447
ANXA3_chr4_78546770_78615447	0/0	t0003	461	71	6	6	50	1	8	copy fasta	ANXA3	chr4	78546770	78615447
ANXA3_chr4_78546770_78615447	0/0	t0004	461	18	18	0	0	0	0	copy fasta	ANXA3	chr4	78546770	78615447
ANXA3_chr4_78546770_78615447	0/0	t0005	461	9	9	0	0	0	0	copy fasta	ANXA3	chr4	78546770	78615447
ANXA3_chr4_78546770_78615447	0/0	t0006	458	8	8	0	0	0	0	copy fasta	ANXA3	chr4	78546770	78615447
ANXA3_chr4_78546770_78615447	0/0	t0007	461	1	1	0	0	0	0	copy fasta	ANXA3	chr4	78546770	78615447
ANXA3_chr4_78546770_78615447	0/0	t0008	461	1	1	0	0	0	0	copy fasta	ANXA3	chr4	78546770	78615447
ANXA4_chr2_69737134_69832112	1/0	t0001	1686	80	3	14	47	6	9	copy fasta	ANXA4	chr2	69737134	69832112
ANXA4_chr2_69737134_69832112	0/0	t0002	1686	74	23	17	29	1	4	copy fasta	ANXA4	chr2	69737134	69832112
ANXA4_chr2_69737134_69832112	0/1	t0003	1687	56	1	7	37	3	7	copy fasta	ANXA4	chr2	69737134	69832112
ANXA4_chr2_69737134_69832112	0/0	t0004	1684	48	12	21	15	0	0	copy fasta	ANXA4	chr2	69737134	69832112
ANXA4_chr2_69737134_69832112	0/0	t0005	1687	33	9	0	20	0	4	copy fasta	ANXA4	chr2	69737134	69832112
ANXA4_chr2_69737134_69832112	0/0	t0006	1685	19	18	1	0	0	0	copy fasta	ANXA4	chr2	69737134	69832112
ANXA4_chr2_69737134_69832112	0/0	t0007	1686	16	7	2	1	1	5	copy fasta	ANXA4	chr2	69737134	69832112
ANXA4_chr2_69737134_69832112	0/0	t0008	1686	4	0	1	3	0	0	copy fasta	ANXA4	chr2	69737134	69832112
ANXA4_chr2_69737134_69832112	0/0	t0009	1686	2	1	1	0	0	0	copy fasta	ANXA4	chr2	69737134	69832112
ANXA4_chr2_69737134_69832112	0/0	t0010	1681	2	2	0	0	0	0	copy fasta	ANXA4	chr2	69737134	69832112
ANXA4_chr2_69737134_69832112	0/0	t0011	1685	2	2	0	0	0	0	copy fasta	ANXA4	chr2	69737134	69832112