JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
KCNV1_chr8_109958636_109980771	0/0	t0040	5410	1	1	0	0	0	0	copy fasta	KCNV1	chr8	109958636	109980771
KCNV1_chr8_109958636_109980771	0/0	t0041	5410	1	1	0	0	0	0	copy fasta	KCNV1	chr8	109958636	109980771
KCNV1_chr8_109958636_109980771	0/0	t0042	5410	1	0	1	0	0	0	copy fasta	KCNV1	chr8	109958636	109980771
KCNV1_chr8_109958636_109980771	0/0	t0043	5410	1	0	0	1	0	0	copy fasta	KCNV1	chr8	109958636	109980771
KCNV1_chr8_109958636_109980771	0/0	t0044	5410	1	1	0	0	0	0	copy fasta	KCNV1	chr8	109958636	109980771
KCNV1_chr8_109958636_109980771	0/0	t0045	5410	1	1	0	0	0	0	copy fasta	KCNV1	chr8	109958636	109980771
KCNV1_chr8_109958636_109980771	0/0	t0046	5410	1	1	0	0	0	0	copy fasta	KCNV1	chr8	109958636	109980771
KCNV2_chr9_2712510_2735037	0/0	t0001	541	172	34	29	99	4	6	copy fasta	KCNV2	chr9	2712510	2735037
KCNV2_chr9_2712510_2735037	1/1	t0002	541	104	27	21	26	8	20	copy fasta	KCNV2	chr9	2712510	2735037
KCNV2_chr9_2712510_2735037	0/0	t0003	541	77	2	7	55	2	11	copy fasta	KCNV2	chr9	2712510	2735037
KCNV2_chr9_2712510_2735037	0/0	t0004	541	39	16	15	1	2	5	copy fasta	KCNV2	chr9	2712510	2735037
KCNV2_chr9_2712510_2735037	0/0	t0005	541	10	0	4	6	0	0	copy fasta	KCNV2	chr9	2712510	2735037
KCNV2_chr9_2712510_2735037	0/0	t0006	541	7	7	0	0	0	0	copy fasta	KCNV2	chr9	2712510	2735037
KCNV2_chr9_2712510_2735037	0/0	t0007	541	4	0	0	4	0	0	copy fasta	KCNV2	chr9	2712510	2735037
KCNV2_chr9_2712510_2735037	0/0	t0008	541	3	0	0	0	1	2	copy fasta	KCNV2	chr9	2712510	2735037
KCNV2_chr9_2712510_2735037	0/0	t0009	541	3	0	0	3	0	0	copy fasta	KCNV2	chr9	2712510	2735037
KCNV2_chr9_2712510_2735037	0/0	t0010	541	3	0	0	1	1	1	copy fasta	KCNV2	chr9	2712510	2735037
KCNV2_chr9_2712510_2735037	0/0	t0011	541	2	0	0	2	0	0	copy fasta	KCNV2	chr9	2712510	2735037
KCNV2_chr9_2712510_2735037	0/0	t0012	541	2	2	0	0	0	0	copy fasta	KCNV2	chr9	2712510	2735037
KCNV2_chr9_2712510_2735037	0/0	t0013	541	2	2	0	0	0	0	copy fasta	KCNV2	chr9	2712510	2735037
KCNV2_chr9_2712510_2735037	0/0	t0014	541	2	2	0	0	0	0	copy fasta	KCNV2	chr9	2712510	2735037
KCNV2_chr9_2712510_2735037	0/0	t0015	541	1	0	1	0	0	0	copy fasta	KCNV2	chr9	2712510	2735037
KCNV2_chr9_2712510_2735037	0/0	t0016	541	1	0	1	0	0	0	copy fasta	KCNV2	chr9	2712510	2735037
KCNV2_chr9_2712510_2735037	0/0	t0017	541	1	1	0	0	0	0	copy fasta	KCNV2	chr9	2712510	2735037
KCNV2_chr9_2712510_2735037	0/0	t0018	541	1	1	0	0	0	0	copy fasta	KCNV2	chr9	2712510	2735037
KCNV2_chr9_2712510_2735037	0/0	t0019	541	1	0	1	0	0	0	copy fasta	KCNV2	chr9	2712510	2735037
KCNV2_chr9_2712510_2735037	0/0	t0020	541	1	0	1	0	0	0	copy fasta	KCNV2	chr9	2712510	2735037
KCNV2_chr9_2712510_2735037	0/0	t0021	541	1	0	1	0	0	0	copy fasta	KCNV2	chr9	2712510	2735037
KCNV2_chr9_2712510_2735037	0/0	t0022	541	1	1	0	0	0	0	copy fasta	KCNV2	chr9	2712510	2735037
KCNV2_chr9_2712510_2735037	0/0	t0023	541	1	1	0	0	0	0	copy fasta	KCNV2	chr9	2712510	2735037
KCNV2_chr9_2712510_2735037	0/0	t0024	541	1	0	0	1	0	0	copy fasta	KCNV2	chr9	2712510	2735037
KCNV2_chr9_2712510_2735037	0/0	t0025	541	1	0	0	0	0	1	copy fasta	KCNV2	chr9	2712510	2735037
KCNV2_chr9_2712510_2735037	0/0	t0026	541	1	0	1	0	0	0	copy fasta	KCNV2	chr9	2712510	2735037
KCP_chr7_128871865_128915709	1/1	t0001	212	191	23	44	88	9	25	copy fasta	KCP	chr7	128871865	128915709
KCP_chr7_128871865_128915709	0/0	t0002	212	175	71	19	57	5	23	copy fasta	KCP	chr7	128871865	128915709
KCP_chr7_128871865_128915709	0/0	t0003	212	3	3	0	0	0	0	copy fasta	KCP	chr7	128871865	128915709
KCP_chr7_128871865_128915709	0/0	t0004	212	1	0	0	1	0	0	copy fasta	KCP	chr7	128871865	128915709
KCP_chr7_128871865_128915709	0/0	t0005	212	1	1	0	0	0	0	copy fasta	KCP	chr7	128871865	128915709
KCP_chr7_128871865_128915709	0/0	t0006	212	1	0	1	0	0	0	copy fasta	KCP	chr7	128871865	128915709
KCTD10_chr12_109443655_109482300	1/0	t0001	2979	173	16	28	107	5	16	copy fasta	KCTD10	chr12	109443655	109482300
KCTD10_chr12_109443655_109482300	0/1	t0002	2976	55	2	11	28	6	7	copy fasta	KCTD10	chr12	109443655	109482300
KCTD10_chr12_109443655_109482300	0/0	t0003	2975	24	1	7	14	2	0	copy fasta	KCTD10	chr12	109443655	109482300
KCTD10_chr12_109443655_109482300	0/0	t0004	2976	17	16	1	0	0	0	copy fasta	KCTD10	chr12	109443655	109482300
KCTD10_chr12_109443655_109482300	0/0	t0005	2976	14	1	3	7	0	3	copy fasta	KCTD10	chr12	109443655	109482300
KCTD10_chr12_109443655_109482300	0/0	t0006	2974	14	6	5	0	1	2	copy fasta	KCTD10	chr12	109443655	109482300
KCTD10_chr12_109443655_109482300	0/0	t0007	2983	9	9	0	0	0	0	copy fasta	KCTD10	chr12	109443655	109482300
KCTD10_chr12_109443655_109482300	0/0	t0008	2977	8	6	2	0	0	0	copy fasta	KCTD10	chr12	109443655	109482300
KCTD10_chr12_109443655_109482300	0/0	t0009	3096	6	0	0	5	0	1	copy fasta	KCTD10	chr12	109443655	109482300
KCTD10_chr12_109443655_109482300	0/0	t0010	2983	5	5	0	0	0	0	copy fasta	KCTD10	chr12	109443655	109482300
KCTD10_chr12_109443655_109482300	0/0	t0011	2976	5	0	2	0	1	2	copy fasta	KCTD10	chr12	109443655	109482300