JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
KCTD10_chr12_109443655_109482300	0/0	t0012	3097	5	4	0	0	0	1	copy fasta	KCTD10	chr12	109443655	109482300
KCTD10_chr12_109443655_109482300	0/0	t0013	2979	5	0	2	0	1	2	copy fasta	KCTD10	chr12	109443655	109482300
KCTD10_chr12_109443655_109482300	0/0	t0014	3095	3	0	3	0	0	0	copy fasta	KCTD10	chr12	109443655	109482300
KCTD10_chr12_109443655_109482300	0/0	t0015	3097	3	3	0	0	0	0	copy fasta	KCTD10	chr12	109443655	109482300
KCTD10_chr12_109443655_109482300	0/0	t0016	2979	3	0	0	3	0	0	copy fasta	KCTD10	chr12	109443655	109482300
KCTD10_chr12_109443655_109482300	0/0	t0017	2972	2	2	0	0	0	0	copy fasta	KCTD10	chr12	109443655	109482300
KCTD10_chr12_109443655_109482300	0/0	t0018	2976	2	2	0	0	0	0	copy fasta	KCTD10	chr12	109443655	109482300
KCTD10_chr12_109443655_109482300	0/0	t0019	2975	2	2	0	0	0	0	copy fasta	KCTD10	chr12	109443655	109482300
KCTD10_chr12_109443655_109482300	0/0	t0020	2976	2	2	0	0	0	0	copy fasta	KCTD10	chr12	109443655	109482300
KCTD10_chr12_109443655_109482300	0/0	t0021	2983	2	2	0	0	0	0	copy fasta	KCTD10	chr12	109443655	109482300
KCTD10_chr12_109443655_109482300	0/0	t0022	2976	2	2	0	0	0	0	copy fasta	KCTD10	chr12	109443655	109482300
KCTD10_chr12_109443655_109482300	0/0	t0023	3096	1	1	0	0	0	0	copy fasta	KCTD10	chr12	109443655	109482300
KCTD10_chr12_109443655_109482300	0/0	t0024	2979	1	0	0	1	0	0	copy fasta	KCTD10	chr12	109443655	109482300
KCTD10_chr12_109443655_109482300	0/0	t0025	3095	1	1	0	0	0	0	copy fasta	KCTD10	chr12	109443655	109482300
KCTD10_chr12_109443655_109482300	0/0	t0026	3098	1	0	0	1	0	0	copy fasta	KCTD10	chr12	109443655	109482300
KCTD10_chr12_109443655_109482300	0/0	t0027	2976	1	1	0	0	0	0	copy fasta	KCTD10	chr12	109443655	109482300
KCTD10_chr12_109443655_109482300	0/0	t0028	2975	1	0	1	0	0	0	copy fasta	KCTD10	chr12	109443655	109482300
KCTD10_chr12_109443655_109482300	0/0	t0029	2979	1	1	0	0	0	0	copy fasta	KCTD10	chr12	109443655	109482300
KCTD10_chr12_109443655_109482300	0/0	t0030	2979	1	0	1	0	0	0	copy fasta	KCTD10	chr12	109443655	109482300
KCTD10_chr12_109443655_109482300	0/0	t0031	2983	1	1	0	0	0	0	copy fasta	KCTD10	chr12	109443655	109482300
KCTD10_chr12_109443655_109482300	0/0	t0032	2976	1	1	0	0	0	0	copy fasta	KCTD10	chr12	109443655	109482300
KCTD10_chr12_109443655_109482300	0/0	t0033	2977	1	1	0	0	0	0	copy fasta	KCTD10	chr12	109443655	109482300
KCTD10_chr12_109443655_109482300	0/0	t0034	3063	1	0	1	0	0	0	copy fasta	KCTD10	chr12	109443655	109482300
KCTD10_chr12_109443655_109482300	0/0	t0035	2976	1	0	0	1	0	0	copy fasta	KCTD10	chr12	109443655	109482300
KCTD10_chr12_109443655_109482300	0/0	t0036	2976	1	1	0	0	0	0	copy fasta	KCTD10	chr12	109443655	109482300
KCTD10_chr12_109443655_109482300	0/0	t0037	2979	1	0	0	1	0	0	copy fasta	KCTD10	chr12	109443655	109482300
KCTD10_chr12_109443655_109482300	0/0	t0038	3095	1	1	0	0	0	0	copy fasta	KCTD10	chr12	109443655	109482300
KCTD10_chr12_109443655_109482300	0/0	t0039	2979	1	0	1	0	0	0	copy fasta	KCTD10	chr12	109443655	109482300
KCTD11_chr17_7347162_7359944	1/0	t0001	1968	187	28	29	104	6	19	copy fasta	KCTD11	chr17	7347162	7359944
KCTD11_chr17_7347162_7359944	0/1	t0002	1974	95	30	42	3	5	14	copy fasta	KCTD11	chr17	7347162	7359944
KCTD11_chr17_7347162_7359944	0/0	t0003	1966	48	12	3	29	0	4	copy fasta	KCTD11	chr17	7347162	7359944
KCTD11_chr17_7347162_7359944	0/0	t0004	1970	20	7	4	7	1	1	copy fasta	KCTD11	chr17	7347162	7359944
KCTD11_chr17_7347162_7359944	0/0	t0005	1976	15	1	2	12	0	0	copy fasta	KCTD11	chr17	7347162	7359944
KCTD11_chr17_7347162_7359944	0/0	t0006	1968	10	0	1	3	2	4	copy fasta	KCTD11	chr17	7347162	7359944
KCTD11_chr17_7347162_7359944	0/0	t0007	1970	6	1	1	0	1	3	copy fasta	KCTD11	chr17	7347162	7359944
KCTD11_chr17_7347162_7359944	0/0	t0008	1972	5	4	0	1	0	0	copy fasta	KCTD11	chr17	7347162	7359944
KCTD11_chr17_7347162_7359944	0/0	t0009	1970	4	4	0	0	0	0	copy fasta	KCTD11	chr17	7347162	7359944
KCTD11_chr17_7347162_7359944	0/0	t0010	1968	3	0	0	3	0	0	copy fasta	KCTD11	chr17	7347162	7359944
KCTD11_chr17_7347162_7359944	0/0	t0011	1970	2	2	0	0	0	0	copy fasta	KCTD11	chr17	7347162	7359944
KCTD11_chr17_7347162_7359944	0/0	t0012	1970	2	2	0	0	0	0	copy fasta	KCTD11	chr17	7347162	7359944
KCTD11_chr17_7347162_7359944	0/0	t0013	1968	2	0	0	2	0	0	copy fasta	KCTD11	chr17	7347162	7359944
KCTD11_chr17_7347162_7359944	0/0	t0014	1968	2	2	0	0	0	0	copy fasta	KCTD11	chr17	7347162	7359944
KCTD11_chr17_7347162_7359944	0/0	t0015	1968	2	0	0	2	0	0	copy fasta	KCTD11	chr17	7347162	7359944
KCTD11_chr17_7347162_7359944	0/0	t0016	1974	2	2	0	0	0	0	copy fasta	KCTD11	chr17	7347162	7359944
KCTD11_chr17_7347162_7359944	0/0	t0017	1968	1	0	0	0	0	1	copy fasta	KCTD11	chr17	7347162	7359944
KCTD11_chr17_7347162_7359944	0/0	t0018	1976	1	0	0	1	0	0	copy fasta	KCTD11	chr17	7347162	7359944
KCTD11_chr17_7347162_7359944	0/0	t0019	1974	1	0	0	0	1	0	copy fasta	KCTD11	chr17	7347162	7359944
KCTD11_chr17_7347162_7359944	0/0	t0020	1974	1	0	1	0	0	0	copy fasta	KCTD11	chr17	7347162	7359944
KCTD11_chr17_7347162_7359944	0/0	t0021	1978	1	0	1	0	0	0	copy fasta	KCTD11	chr17	7347162	7359944
KCTD11_chr17_7347162_7359944	0/0	t0022	1974	1	1	0	0	0	0	copy fasta	KCTD11	chr17	7347162	7359944