JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
KCTD12_chr13_76875175_76891405	0/0	t0094	5266	1	0	0	1	0	0	copy fasta	KCTD12	chr13	76875175	76891405
KCTD12_chr13_76875175_76891405	0/0	t0095	5266	1	0	0	1	0	0	copy fasta	KCTD12	chr13	76875175	76891405
KCTD12_chr13_76875175_76891405	0/0	t0096	5265	1	1	0	0	0	0	copy fasta	KCTD12	chr13	76875175	76891405
KCTD12_chr13_76875175_76891405	0/0	t0097	5266	1	0	0	0	1	0	copy fasta	KCTD12	chr13	76875175	76891405
KCTD12_chr13_76875175_76891405	0/0	t0098	5267	1	0	0	1	0	0	copy fasta	KCTD12	chr13	76875175	76891405
KCTD12_chr13_76875175_76891405	0/0	t0099	5265	1	0	0	1	0	0	copy fasta	KCTD12	chr13	76875175	76891405
KCTD12_chr13_76875175_76891405	0/0	t0100	5257	1	1	0	0	0	0	copy fasta	KCTD12	chr13	76875175	76891405
KCTD12_chr13_76875175_76891405	0/0	t0101	5256	1	1	0	0	0	0	copy fasta	KCTD12	chr13	76875175	76891405
KCTD12_chr13_76875175_76891405	0/0	t0102	5256	1	0	0	1	0	0	copy fasta	KCTD12	chr13	76875175	76891405
KCTD12_chr13_76875175_76891405	0/0	t0103	5265	1	0	0	1	0	0	copy fasta	KCTD12	chr13	76875175	76891405
KCTD12_chr13_76875175_76891405	0/0	t0104	5266	1	0	0	1	0	0	copy fasta	KCTD12	chr13	76875175	76891405
KCTD12_chr13_76875175_76891405	0/0	t0105	5266	1	0	0	1	0	0	copy fasta	KCTD12	chr13	76875175	76891405
KCTD12_chr13_76875175_76891405	0/0	t0106	5266	1	1	0	0	0	0	copy fasta	KCTD12	chr13	76875175	76891405
KCTD12_chr13_76875175_76891405	0/0	t0107	5266	1	0	1	0	0	0	copy fasta	KCTD12	chr13	76875175	76891405
KCTD12_chr13_76875175_76891405	0/0	t0108	5267	1	0	0	0	1	0	copy fasta	KCTD12	chr13	76875175	76891405
KCTD12_chr13_76875175_76891405	0/0	t0109	5266	1	0	0	1	0	0	copy fasta	KCTD12	chr13	76875175	76891405
KCTD12_chr13_76875175_76891405	1/0	t0110	5254	1	0	0	0	0	0	copy fasta	KCTD12	chr13	76875175	76891405
KCTD12_chr13_76875175_76891405	0/0	t0111	5256	1	0	0	0	0	1	copy fasta	KCTD12	chr13	76875175	76891405
KCTD12_chr13_76875175_76891405	0/0	t0112	5251	1	1	0	0	0	0	copy fasta	KCTD12	chr13	76875175	76891405
KCTD12_chr13_76875175_76891405	0/0	t0113	5261	1	1	0	0	0	0	copy fasta	KCTD12	chr13	76875175	76891405
KCTD12_chr13_76875175_76891405	0/0	t0114	5261	1	1	0	0	0	0	copy fasta	KCTD12	chr13	76875175	76891405
KCTD12_chr13_76875175_76891405	0/0	t0115	5261	1	1	0	0	0	0	copy fasta	KCTD12	chr13	76875175	76891405
KCTD12_chr13_76875175_76891405	0/0	t0116	5260	1	1	0	0	0	0	copy fasta	KCTD12	chr13	76875175	76891405
KCTD12_chr13_76875175_76891405	0/0	t0117	5250	1	1	0	0	0	0	copy fasta	KCTD12	chr13	76875175	76891405
KCTD12_chr13_76875175_76891405	0/0	t0118	5266	1	0	0	1	0	0	copy fasta	KCTD12	chr13	76875175	76891405
KCTD12_chr13_76875175_76891405	0/0	t0119	5257	1	0	0	1	0	0	copy fasta	KCTD12	chr13	76875175	76891405
KCTD12_chr13_76875175_76891405	0/0	t0120	5267	1	0	0	1	0	0	copy fasta	KCTD12	chr13	76875175	76891405
KCTD12_chr13_76875175_76891405	0/0	t0121	5256	1	0	0	0	0	1	copy fasta	KCTD12	chr13	76875175	76891405
KCTD12_chr13_76875175_76891405	0/0	t0122	5263	1	0	1	0	0	0	copy fasta	KCTD12	chr13	76875175	76891405
KCTD12_chr13_76875175_76891405	0/0	t0123	5266	1	0	0	1	0	0	copy fasta	KCTD12	chr13	76875175	76891405
KCTD12_chr13_76875175_76891405	0/0	t0124	5266	1	0	1	0	0	0	copy fasta	KCTD12	chr13	76875175	76891405
KCTD12_chr13_76875175_76891405	0/0	t0125	5271	1	0	0	1	0	0	copy fasta	KCTD12	chr13	76875175	76891405
KCTD12_chr13_76875175_76891405	0/0	t0126	5272	1	1	0	0	0	0	copy fasta	KCTD12	chr13	76875175	76891405
KCTD12_chr13_76875175_76891405	0/0	t0127	5262	1	1	0	0	0	0	copy fasta	KCTD12	chr13	76875175	76891405
KCTD12_chr13_76875175_76891405	0/0	t0128	5262	1	0	0	1	0	0	copy fasta	KCTD12	chr13	76875175	76891405
KCTD12_chr13_76875175_76891405	0/0	t0129	5262	1	0	0	1	0	0	copy fasta	KCTD12	chr13	76875175	76891405
KCTD12_chr13_76875175_76891405	0/0	t0130	5266	1	1	0	0	0	0	copy fasta	KCTD12	chr13	76875175	76891405
KCTD12_chr13_76875175_76891405	0/0	t0131	5271	1	1	0	0	0	0	copy fasta	KCTD12	chr13	76875175	76891405
KCTD12_chr13_76875175_76891405	0/0	t0132	5266	1	0	0	0	0	1	copy fasta	KCTD12	chr13	76875175	76891405
KCTD12_chr13_76875175_76891405	0/0	t0133	5265	1	0	0	0	1	0	copy fasta	KCTD12	chr13	76875175	76891405
KCTD12_chr13_76875175_76891405	0/0	t0134	5269	1	1	0	0	0	0	copy fasta	KCTD12	chr13	76875175	76891405
KCTD12_chr13_76875175_76891405	0/0	t0135	5271	1	1	0	0	0	0	copy fasta	KCTD12	chr13	76875175	76891405
KCTD12_chr13_76875175_76891405	0/0	t0136	5269	1	0	1	0	0	0	copy fasta	KCTD12	chr13	76875175	76891405
KCTD12_chr13_76875175_76891405	0/0	t0137	5260	1	1	0	0	0	0	copy fasta	KCTD12	chr13	76875175	76891405
KCTD12_chr13_76875175_76891405	0/0	t0138	5259	1	1	0	0	0	0	copy fasta	KCTD12	chr13	76875175	76891405
KCTD12_chr13_76875175_76891405	0/0	t0139	5269	1	0	0	1	0	0	copy fasta	KCTD12	chr13	76875175	76891405
KCTD12_chr13_76875175_76891405	0/0	t0140	5267	1	0	1	0	0	0	copy fasta	KCTD12	chr13	76875175	76891405
KCTD12_chr13_76875175_76891405	0/0	t0141	5266	1	1	0	0	0	0	copy fasta	KCTD12	chr13	76875175	76891405
KCTD13_chr16_29901339_29931226	1/1	t0001	727	208	44	42	87	8	25	copy fasta	KCTD13	chr16	29901339	29931226
KCTD13_chr16_29901339_29931226	0/0	t0002	727	135	32	22	62	8	11	copy fasta	KCTD13	chr16	29901339	29931226