JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
KCTD13_chr16_29901339_29931226	0/0	t0003	727	5	5	0	0	0	0	copy fasta	KCTD13	chr16	29901339	29931226
KCTD13_chr16_29901339_29931226	0/0	t0004	727	3	0	0	3	0	0	copy fasta	KCTD13	chr16	29901339	29931226
KCTD13_chr16_29901339_29931226	0/0	t0005	727	2	0	0	2	0	0	copy fasta	KCTD13	chr16	29901339	29931226
KCTD13_chr16_29901339_29931226	0/0	t0006	727	1	0	0	1	0	0	copy fasta	KCTD13	chr16	29901339	29931226
KCTD13_chr16_29901339_29931226	0/0	t0007	727	1	1	0	0	0	0	copy fasta	KCTD13	chr16	29901339	29931226
KCTD13_chr16_29901339_29931226	0/0	t0008	727	1	1	0	0	0	0	copy fasta	KCTD13	chr16	29901339	29931226
KCTD13_chr16_29901339_29931226	0/0	t0009	727	1	1	0	0	0	0	copy fasta	KCTD13	chr16	29901339	29931226
KCTD13_chr16_29901339_29931226	0/0	t0010	727	1	0	0	1	0	0	copy fasta	KCTD13	chr16	29901339	29931226
KCTD14_chr11_78010715_78028276	1/1	t0001	906	261	54	51	108	13	33	copy fasta	KCTD14	chr11	78010715	78028276
KCTD14_chr11_78010715_78028276	0/0	t0002	906	126	17	20	81	2	6	copy fasta	KCTD14	chr11	78010715	78028276
KCTD14_chr11_78010715_78028276	0/0	t0003	906	37	2	6	21	2	6	copy fasta	KCTD14	chr11	78010715	78028276
KCTD14_chr11_78010715_78028276	0/0	t0004	906	16	8	0	5	0	3	copy fasta	KCTD14	chr11	78010715	78028276
KCTD14_chr11_78010715_78028276	0/0	t0005	906	14	11	2	0	1	0	copy fasta	KCTD14	chr11	78010715	78028276
KCTD14_chr11_78010715_78028276	0/0	t0006	906	4	0	0	4	0	0	copy fasta	KCTD14	chr11	78010715	78028276
KCTD14_chr11_78010715_78028276	0/0	t0007	906	3	2	1	0	0	0	copy fasta	KCTD14	chr11	78010715	78028276
KCTD14_chr11_78010715_78028276	0/0	t0008	906	3	0	0	3	0	0	copy fasta	KCTD14	chr11	78010715	78028276
KCTD14_chr11_78010715_78028276	0/0	t0009	906	1	0	0	1	0	0	copy fasta	KCTD14	chr11	78010715	78028276
KCTD14_chr11_78010715_78028276	0/0	t0010	906	1	0	0	1	0	0	copy fasta	KCTD14	chr11	78010715	78028276
KCTD14_chr11_78010715_78028276	0/0	t0011	906	1	0	1	0	0	0	copy fasta	KCTD14	chr11	78010715	78028276
KCTD14_chr11_78010715_78028276	0/0	t0012	892	1	0	1	0	0	0	copy fasta	KCTD14	chr11	78010715	78028276
KCTD15_chr19_33791870_33820761	0/1	t0001	3055	109	6	11	73	5	13	copy fasta	KCTD15	chr19	33791870	33820761
KCTD15_chr19_33791870_33820761	0/0	t0002	3056	60	27	17	8	2	6	copy fasta	KCTD15	chr19	33791870	33820761
KCTD15_chr19_33791870_33820761	0/0	t0003	3061	55	21	12	9	2	11	copy fasta	KCTD15	chr19	33791870	33820761
KCTD15_chr19_33791870_33820761	0/0	t0004	3060	36	1	12	18	0	5	copy fasta	KCTD15	chr19	33791870	33820761
KCTD15_chr19_33791870_33820761	0/0	t0005	3061	18	0	2	13	1	2	copy fasta	KCTD15	chr19	33791870	33820761
KCTD15_chr19_33791870_33820761	0/0	t0006	3061	9	8	1	0	0	0	copy fasta	KCTD15	chr19	33791870	33820761
KCTD15_chr19_33791870_33820761	1/0	t0007	3058	8	1	3	0	1	2	copy fasta	KCTD15	chr19	33791870	33820761
KCTD15_chr19_33791870_33820761	0/0	t0008	3056	8	0	2	5	0	1	copy fasta	KCTD15	chr19	33791870	33820761
KCTD15_chr19_33791870_33820761	0/0	t0009	3052	6	1	3	0	2	0	copy fasta	KCTD15	chr19	33791870	33820761
KCTD15_chr19_33791870_33820761	0/0	t0010	3061	5	0	2	3	0	0	copy fasta	KCTD15	chr19	33791870	33820761
KCTD15_chr19_33791870_33820761	0/0	t0011	3055	4	4	0	0	0	0	copy fasta	KCTD15	chr19	33791870	33820761
KCTD15_chr19_33791870_33820761	0/0	t0012	3061	3	3	0	0	0	0	copy fasta	KCTD15	chr19	33791870	33820761
KCTD15_chr19_33791870_33820761	0/0	t0013	3060	3	0	0	1	2	0	copy fasta	KCTD15	chr19	33791870	33820761
KCTD15_chr19_33791870_33820761	0/0	t0014	3061	3	0	3	0	0	0	copy fasta	KCTD15	chr19	33791870	33820761
KCTD15_chr19_33791870_33820761	0/0	t0015	3052	3	2	0	0	1	0	copy fasta	KCTD15	chr19	33791870	33820761
KCTD15_chr19_33791870_33820761	0/0	t0016	3060	2	1	0	1	0	0	copy fasta	KCTD15	chr19	33791870	33820761
KCTD15_chr19_33791870_33820761	0/0	t0017	3064	2	1	0	0	0	1	copy fasta	KCTD15	chr19	33791870	33820761
KCTD15_chr19_33791870_33820761	0/0	t0018	3061	2	1	0	0	0	1	copy fasta	KCTD15	chr19	33791870	33820761
KCTD15_chr19_33791870_33820761	0/0	t0019	3055	2	0	2	0	0	0	copy fasta	KCTD15	chr19	33791870	33820761
KCTD15_chr19_33791870_33820761	0/0	t0020	3055	2	0	0	2	0	0	copy fasta	KCTD15	chr19	33791870	33820761
KCTD15_chr19_33791870_33820761	0/0	t0021	3061	1	0	0	0	1	0	copy fasta	KCTD15	chr19	33791870	33820761
KCTD15_chr19_33791870_33820761	0/0	t0022	3059	1	0	1	0	0	0	copy fasta	KCTD15	chr19	33791870	33820761
KCTD15_chr19_33791870_33820761	0/0	t0023	3064	1	1	0	0	0	0	copy fasta	KCTD15	chr19	33791870	33820761
KCTD15_chr19_33791870_33820761	0/0	t0024	3061	1	1	0	0	0	0	copy fasta	KCTD15	chr19	33791870	33820761
KCTD15_chr19_33791870_33820761	0/0	t0025	3060	1	1	0	0	0	0	copy fasta	KCTD15	chr19	33791870	33820761
KCTD15_chr19_33791870_33820761	0/0	t0026	3064	1	1	0	0	0	0	copy fasta	KCTD15	chr19	33791870	33820761
KCTD15_chr19_33791870_33820761	0/0	t0027	3057	1	1	0	0	0	0	copy fasta	KCTD15	chr19	33791870	33820761
KCTD15_chr19_33791870_33820761	0/0	t0028	3061	1	1	0	0	0	0	copy fasta	KCTD15	chr19	33791870	33820761
KCTD15_chr19_33791870_33820761	0/0	t0029	3060	1	0	0	1	0	0	copy fasta	KCTD15	chr19	33791870	33820761
KCTD15_chr19_33791870_33820761	0/0	t0030	3061	1	0	0	0	0	1	copy fasta	KCTD15	chr19	33791870	33820761