JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
KCTD15_chr19_33791870_33820761	0/0	t0031	3061	1	0	0	1	0	0	copy fasta	KCTD15	chr19	33791870	33820761
KCTD15_chr19_33791870_33820761	0/0	t0032	3061	1	0	0	0	1	0	copy fasta	KCTD15	chr19	33791870	33820761
KCTD15_chr19_33791870_33820761	0/0	t0033	3061	1	1	0	0	0	0	copy fasta	KCTD15	chr19	33791870	33820761
KCTD15_chr19_33791870_33820761	0/0	t0034	3060	1	1	0	0	0	0	copy fasta	KCTD15	chr19	33791870	33820761
KCTD15_chr19_33791870_33820761	0/0	t0035	3061	1	0	0	1	0	0	copy fasta	KCTD15	chr19	33791870	33820761
KCTD15_chr19_33791870_33820761	0/0	t0036	3055	1	0	0	1	0	0	copy fasta	KCTD15	chr19	33791870	33820761
KCTD15_chr19_33791870_33820761	0/0	t0037	3056	1	1	0	0	0	0	copy fasta	KCTD15	chr19	33791870	33820761
KCTD15_chr19_33791870_33820761	0/0	t0038	3055	1	0	0	1	0	0	copy fasta	KCTD15	chr19	33791870	33820761
KCTD15_chr19_33791870_33820761	0/0	t0039	3055	1	0	0	1	0	0	copy fasta	KCTD15	chr19	33791870	33820761
KCTD15_chr19_33791870_33820761	0/0	t0040	3055	1	0	0	1	0	0	copy fasta	KCTD15	chr19	33791870	33820761
KCTD15_chr19_33791870_33820761	0/0	t0041	3055	1	0	0	1	0	0	copy fasta	KCTD15	chr19	33791870	33820761
KCTD15_chr19_33791870_33820761	0/0	t0042	3055	1	0	0	0	0	1	copy fasta	KCTD15	chr19	33791870	33820761
KCTD15_chr19_33791870_33820761	0/0	t0043	3055	1	1	0	0	0	0	copy fasta	KCTD15	chr19	33791870	33820761
KCTD15_chr19_33791870_33820761	0/0	t0044	3055	1	0	0	1	0	0	copy fasta	KCTD15	chr19	33791870	33820761
KCTD15_chr19_33791870_33820761	0/0	t0045	3055	1	1	0	0	0	0	copy fasta	KCTD15	chr19	33791870	33820761
KCTD15_chr19_33791870_33820761	0/0	t0046	3056	1	0	1	0	0	0	copy fasta	KCTD15	chr19	33791870	33820761
KCTD15_chr19_33791870_33820761	0/0	t0047	3056	1	0	1	0	0	0	copy fasta	KCTD15	chr19	33791870	33820761
KCTD15_chr19_33791870_33820761	0/0	t0048	3056	1	0	1	0	0	0	copy fasta	KCTD15	chr19	33791870	33820761
KCTD15_chr19_33791870_33820761	0/0	t0049	3079	1	1	0	0	0	0	copy fasta	KCTD15	chr19	33791870	33820761
KCTD15_chr19_33791870_33820761	0/0	t0050	3055	1	1	0	0	0	0	copy fasta	KCTD15	chr19	33791870	33820761
KCTD16_chr5_144165873_144490686	0/0	t0001	12196	33	1	8	16	2	6	copy fasta	KCTD16	chr5	144165873	144490686
KCTD16_chr5_144165873_144490686	0/0	t0002	12202	16	2	2	9	0	3	copy fasta	KCTD16	chr5	144165873	144490686
KCTD16_chr5_144165873_144490686	0/0	t0003	12203	10	1	3	1	3	2	copy fasta	KCTD16	chr5	144165873	144490686
KCTD16_chr5_144165873_144490686	0/0	t0004	12196	6	0	4	0	2	0	copy fasta	KCTD16	chr5	144165873	144490686
KCTD16_chr5_144165873_144490686	0/0	t0005	12202	4	4	0	0	0	0	copy fasta	KCTD16	chr5	144165873	144490686
KCTD16_chr5_144165873_144490686	0/0	t0006	12197	4	1	1	1	0	1	copy fasta	KCTD16	chr5	144165873	144490686
KCTD16_chr5_144165873_144490686	0/0	t0007	12196	3	3	0	0	0	0	copy fasta	KCTD16	chr5	144165873	144490686
KCTD16_chr5_144165873_144490686	0/0	t0008	12196	3	0	0	3	0	0	copy fasta	KCTD16	chr5	144165873	144490686
KCTD16_chr5_144165873_144490686	0/0	t0009	12196	3	2	1	0	0	0	copy fasta	KCTD16	chr5	144165873	144490686
KCTD16_chr5_144165873_144490686	0/0	t0010	12195	3	1	2	0	0	0	copy fasta	KCTD16	chr5	144165873	144490686
KCTD16_chr5_144165873_144490686	0/0	t0011	12196	3	0	2	0	1	0	copy fasta	KCTD16	chr5	144165873	144490686
KCTD16_chr5_144165873_144490686	0/0	t0012	12197	2	1	1	0	0	0	copy fasta	KCTD16	chr5	144165873	144490686
KCTD16_chr5_144165873_144490686	0/0	t0013	12203	2	0	0	0	0	2	copy fasta	KCTD16	chr5	144165873	144490686
KCTD16_chr5_144165873_144490686	0/0	t0014	12202	2	2	0	0	0	0	copy fasta	KCTD16	chr5	144165873	144490686
KCTD16_chr5_144165873_144490686	0/0	t0015	12201	2	0	2	0	0	0	copy fasta	KCTD16	chr5	144165873	144490686
KCTD16_chr5_144165873_144490686	0/0	t0016	12196	2	2	0	0	0	0	copy fasta	KCTD16	chr5	144165873	144490686
KCTD16_chr5_144165873_144490686	0/0	t0017	12195	2	1	0	1	0	0	copy fasta	KCTD16	chr5	144165873	144490686
KCTD16_chr5_144165873_144490686	0/0	t0018	12197	2	1	1	0	0	0	copy fasta	KCTD16	chr5	144165873	144490686
KCTD16_chr5_144165873_144490686	0/0	t0019	12196	2	0	0	2	0	0	copy fasta	KCTD16	chr5	144165873	144490686
KCTD16_chr5_144165873_144490686	0/0	t0020	12202	2	1	0	0	0	1	copy fasta	KCTD16	chr5	144165873	144490686
KCTD16_chr5_144165873_144490686	0/0	t0021	12203	2	1	1	0	0	0	copy fasta	KCTD16	chr5	144165873	144490686
KCTD16_chr5_144165873_144490686	0/0	t0022	12202	2	2	0	0	0	0	copy fasta	KCTD16	chr5	144165873	144490686
KCTD16_chr5_144165873_144490686	0/0	t0023	12202	2	2	0	0	0	0	copy fasta	KCTD16	chr5	144165873	144490686
KCTD16_chr5_144165873_144490686	0/0	t0024	12202	1	1	0	0	0	0	copy fasta	KCTD16	chr5	144165873	144490686
KCTD16_chr5_144165873_144490686	0/0	t0025	12195	1	1	0	0	0	0	copy fasta	KCTD16	chr5	144165873	144490686
KCTD16_chr5_144165873_144490686	0/0	t0026	12196	1	1	0	0	0	0	copy fasta	KCTD16	chr5	144165873	144490686
KCTD16_chr5_144165873_144490686	0/0	t0027	12195	1	1	0	0	0	0	copy fasta	KCTD16	chr5	144165873	144490686
KCTD16_chr5_144165873_144490686	0/0	t0028	12202	1	1	0	0	0	0	copy fasta	KCTD16	chr5	144165873	144490686
KCTD16_chr5_144165873_144490686	0/0	t0029	12196	1	1	0	0	0	0	copy fasta	KCTD16	chr5	144165873	144490686
KCTD16_chr5_144165873_144490686	0/0	t0030	12197	1	1	0	0	0	0	copy fasta	KCTD16	chr5	144165873	144490686