JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
KCTD16_chr5_144165873_144490686	0/0	t0031	12203	1	1	0	0	0	0	copy fasta	KCTD16	chr5	144165873	144490686
KCTD16_chr5_144165873_144490686	0/0	t0032	12202	1	1	0	0	0	0	copy fasta	KCTD16	chr5	144165873	144490686
KCTD16_chr5_144165873_144490686	0/0	t0033	12202	1	1	0	0	0	0	copy fasta	KCTD16	chr5	144165873	144490686
KCTD16_chr5_144165873_144490686	0/0	t0034	12202	1	0	1	0	0	0	copy fasta	KCTD16	chr5	144165873	144490686
KCTD16_chr5_144165873_144490686	0/0	t0035	12203	1	0	0	1	0	0	copy fasta	KCTD16	chr5	144165873	144490686
KCTD16_chr5_144165873_144490686	0/0	t0036	12202	1	0	0	1	0	0	copy fasta	KCTD16	chr5	144165873	144490686
KCTD16_chr5_144165873_144490686	0/0	t0037	12202	1	0	0	1	0	0	copy fasta	KCTD16	chr5	144165873	144490686
KCTD16_chr5_144165873_144490686	0/0	t0038	12202	1	0	0	0	0	1	copy fasta	KCTD16	chr5	144165873	144490686
KCTD16_chr5_144165873_144490686	0/0	t0039	12196	1	0	0	1	0	0	copy fasta	KCTD16	chr5	144165873	144490686
KCTD16_chr5_144165873_144490686	0/0	t0040	12195	1	1	0	0	0	0	copy fasta	KCTD16	chr5	144165873	144490686
KCTD16_chr5_144165873_144490686	0/0	t0041	12199	1	1	0	0	0	0	copy fasta	KCTD16	chr5	144165873	144490686
KCTD16_chr5_144165873_144490686	0/0	t0042	12198	1	0	0	1	0	0	copy fasta	KCTD16	chr5	144165873	144490686
KCTD16_chr5_144165873_144490686	0/0	t0043	12196	1	1	0	0	0	0	copy fasta	KCTD16	chr5	144165873	144490686
KCTD16_chr5_144165873_144490686	0/0	t0044	12196	1	1	0	0	0	0	copy fasta	KCTD16	chr5	144165873	144490686
KCTD16_chr5_144165873_144490686	0/0	t0045	12195	1	1	0	0	0	0	copy fasta	KCTD16	chr5	144165873	144490686
KCTD16_chr5_144165873_144490686	0/0	t0046	12197	1	0	0	1	0	0	copy fasta	KCTD16	chr5	144165873	144490686
KCTD16_chr5_144165873_144490686	0/0	t0047	12197	1	1	0	0	0	0	copy fasta	KCTD16	chr5	144165873	144490686
KCTD16_chr5_144165873_144490686	0/0	t0048	12196	1	0	0	0	0	1	copy fasta	KCTD16	chr5	144165873	144490686
KCTD16_chr5_144165873_144490686	0/0	t0049	12196	1	0	0	1	0	0	copy fasta	KCTD16	chr5	144165873	144490686
KCTD16_chr5_144165873_144490686	0/0	t0050	12196	1	0	0	1	0	0	copy fasta	KCTD16	chr5	144165873	144490686
KCTD16_chr5_144165873_144490686	0/0	t0051	12196	1	0	1	0	0	0	copy fasta	KCTD16	chr5	144165873	144490686
KCTD16_chr5_144165873_144490686	0/0	t0052	12203	1	0	1	0	0	0	copy fasta	KCTD16	chr5	144165873	144490686
KCTD16_chr5_144165873_144490686	0/0	t0053	12202	1	0	0	0	0	1	copy fasta	KCTD16	chr5	144165873	144490686
KCTD16_chr5_144165873_144490686	0/0	t0054	12201	1	0	1	0	0	0	copy fasta	KCTD16	chr5	144165873	144490686
KCTD16_chr5_144165873_144490686	0/0	t0055	12201	1	0	1	0	0	0	copy fasta	KCTD16	chr5	144165873	144490686
KCTD16_chr5_144165873_144490686	0/0	t0056	12204	1	0	1	0	0	0	copy fasta	KCTD16	chr5	144165873	144490686
KCTD16_chr5_144165873_144490686	0/0	t0057	12196	1	1	0	0	0	0	copy fasta	KCTD16	chr5	144165873	144490686
KCTD16_chr5_144165873_144490686	0/0	t0058	12197	1	0	0	1	0	0	copy fasta	KCTD16	chr5	144165873	144490686
KCTD16_chr5_144165873_144490686	0/0	t0059	12198	1	1	0	0	0	0	copy fasta	KCTD16	chr5	144165873	144490686
KCTD16_chr5_144165873_144490686	0/0	t0060	12197	1	1	0	0	0	0	copy fasta	KCTD16	chr5	144165873	144490686
KCTD16_chr5_144165873_144490686	0/0	t0061	12197	1	1	0	0	0	0	copy fasta	KCTD16	chr5	144165873	144490686
KCTD16_chr5_144165873_144490686	0/0	t0062	12195	1	1	0	0	0	0	copy fasta	KCTD16	chr5	144165873	144490686
KCTD16_chr5_144165873_144490686	0/0	t0063	12202	1	1	0	0	0	0	copy fasta	KCTD16	chr5	144165873	144490686
KCTD16_chr5_144165873_144490686	0/0	t0064	12202	1	1	0	0	0	0	copy fasta	KCTD16	chr5	144165873	144490686
KCTD16_chr5_144165873_144490686	0/0	t0065	12196	1	1	0	0	0	0	copy fasta	KCTD16	chr5	144165873	144490686
KCTD16_chr5_144165873_144490686	0/0	t0066	12196	1	1	0	0	0	0	copy fasta	KCTD16	chr5	144165873	144490686
KCTD16_chr5_144165873_144490686	0/0	t0067	12197	1	1	0	0	0	0	copy fasta	KCTD16	chr5	144165873	144490686
KCTD17_chr22_37046742_37068390	1/1	t0001	816	356	80	78	136	16	44	copy fasta	KCTD17	chr22	37046742	37068390
KCTD17_chr22_37046742_37068390	0/0	t0002	815	4	4	0	0	0	0	copy fasta	KCTD17	chr22	37046742	37068390
KCTD17_chr22_37046742_37068390	0/0	t0003	816	3	3	0	0	0	0	copy fasta	KCTD17	chr22	37046742	37068390
KCTD17_chr22_37046742_37068390	0/0	t0004	816	3	3	0	0	0	0	copy fasta	KCTD17	chr22	37046742	37068390
KCTD17_chr22_37046742_37068390	0/0	t0005	816	2	2	0	0	0	0	copy fasta	KCTD17	chr22	37046742	37068390
KCTD17_chr22_37046742_37068390	0/0	t0006	816	1	0	0	1	0	0	copy fasta	KCTD17	chr22	37046742	37068390
KCTD17_chr22_37046742_37068390	0/0	t0007	858	1	0	0	1	0	0	copy fasta	KCTD17	chr22	37046742	37068390
KCTD18_chr2_200483958_200515068	0/0	t0001	1659	188	58	37	64	12	17	copy fasta	KCTD18	chr2	200483958	200515068
KCTD18_chr2_200483958_200515068	0/0	t0002	1659	58	1	6	46	0	5	copy fasta	KCTD18	chr2	200483958	200515068
KCTD18_chr2_200483958_200515068	1/0	t0003	1659	58	12	21	14	2	8	copy fasta	KCTD18	chr2	200483958	200515068
KCTD18_chr2_200483958_200515068	0/0	t0004	1659	40	1	3	35	0	1	copy fasta	KCTD18	chr2	200483958	200515068
KCTD18_chr2_200483958_200515068	0/0	t0005	1659	27	8	1	12	1	5	copy fasta	KCTD18	chr2	200483958	200515068
KCTD18_chr2_200483958_200515068	0/1	t0006	1658	21	0	9	9	2	0	copy fasta	KCTD18	chr2	200483958	200515068