JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
KCTD18_chr2_200483958_200515068	0/0	t0007	1658	11	0	0	11	0	0	copy fasta	KCTD18	chr2	200483958	200515068
KCTD18_chr2_200483958_200515068	0/0	t0008	1659	11	1	0	3	0	7	copy fasta	KCTD18	chr2	200483958	200515068
KCTD18_chr2_200483958_200515068	0/0	t0009	1659	6	6	0	0	0	0	copy fasta	KCTD18	chr2	200483958	200515068
KCTD18_chr2_200483958_200515068	0/0	t0010	1668	4	0	4	0	0	0	copy fasta	KCTD18	chr2	200483958	200515068
KCTD18_chr2_200483958_200515068	0/0	t0011	1659	3	0	1	2	0	0	copy fasta	KCTD18	chr2	200483958	200515068
KCTD18_chr2_200483958_200515068	0/0	t0012	1659	2	2	0	0	0	0	copy fasta	KCTD18	chr2	200483958	200515068
KCTD18_chr2_200483958_200515068	0/0	t0013	1658	1	0	0	1	0	0	copy fasta	KCTD18	chr2	200483958	200515068
KCTD18_chr2_200483958_200515068	0/0	t0014	1659	1	1	0	0	0	0	copy fasta	KCTD18	chr2	200483958	200515068
KCTD18_chr2_200483958_200515068	0/0	t0015	1659	1	0	0	0	0	1	copy fasta	KCTD18	chr2	200483958	200515068
KCTD18_chr2_200483958_200515068	0/0	t0016	1659	1	1	0	0	0	0	copy fasta	KCTD18	chr2	200483958	200515068
KCTD18_chr2_200483958_200515068	0/0	t0017	1670	1	1	0	0	0	0	copy fasta	KCTD18	chr2	200483958	200515068
KCTD18_chr2_200483958_200515068	0/0	t0018	1659	1	0	0	1	0	0	copy fasta	KCTD18	chr2	200483958	200515068
KCTD18_chr2_200483958_200515068	0/0	t0019	1659	1	0	0	1	0	0	copy fasta	KCTD18	chr2	200483958	200515068
KCTD18_chr2_200483958_200515068	0/0	t0020	1659	1	0	0	1	0	0	copy fasta	KCTD18	chr2	200483958	200515068
KCTD18_chr2_200483958_200515068	0/0	t0021	1659	1	1	0	0	0	0	copy fasta	KCTD18	chr2	200483958	200515068
KCTD18_chr2_200483958_200515068	0/0	t0022	1659	1	1	0	0	0	0	copy fasta	KCTD18	chr2	200483958	200515068
KCTD18_chr2_200483958_200515068	0/0	t0023	1659	1	0	0	1	0	0	copy fasta	KCTD18	chr2	200483958	200515068
KCTD18_chr2_200483958_200515068	0/0	t0024	1659	1	0	0	0	1	0	copy fasta	KCTD18	chr2	200483958	200515068
KCTD18_chr2_200483958_200515068	0/0	t0025	1659	1	0	0	1	0	0	copy fasta	KCTD18	chr2	200483958	200515068
KCTD19_chr16_67284432_67331741	1/1	t0001	172	230	72	50	60	12	34	copy fasta	KCTD19	chr16	67284432	67331741
KCTD19_chr16_67284432_67331741	0/0	t0002	172	1	0	1	0	0	0	copy fasta	KCTD19	chr16	67284432	67331741
KCTD19_chr16_67284432_67331741	0/0	t0003	172	1	0	1	0	0	0	copy fasta	KCTD19	chr16	67284432	67331741
KCTD1_chr18_26449910_26553553	0/1	t0001	851	242	42	50	105	14	30	copy fasta	KCTD1	chr18	26449910	26553553
KCTD1_chr18_26449910_26553553	0/0	t0002	852	50	24	8	11	2	5	copy fasta	KCTD1	chr18	26449910	26553553
KCTD1_chr18_26449910_26553553	0/0	t0003	848	21	8	7	1	2	3	copy fasta	KCTD1	chr18	26449910	26553553
KCTD1_chr18_26449910_26553553	0/0	t0004	851	10	10	0	0	0	0	copy fasta	KCTD1	chr18	26449910	26553553
KCTD1_chr18_26449910_26553553	0/0	t0005	846	5	0	0	5	0	0	copy fasta	KCTD1	chr18	26449910	26553553
KCTD1_chr18_26449910_26553553	1/0	t0006	851	5	4	0	0	0	0	copy fasta	KCTD1	chr18	26449910	26553553
KCTD1_chr18_26449910_26553553	0/0	t0007	852	3	3	0	0	0	0	copy fasta	KCTD1	chr18	26449910	26553553
KCTD1_chr18_26449910_26553553	0/0	t0008	847	1	0	1	0	0	0	copy fasta	KCTD1	chr18	26449910	26553553
KCTD1_chr18_26449910_26553553	0/0	t0009	851	1	1	0	0	0	0	copy fasta	KCTD1	chr18	26449910	26553553
KCTD20_chr6_36438000_36496141	1/1	t0001	4125	128	22	21	67	3	13	copy fasta	KCTD20	chr6	36438000	36496141
KCTD20_chr6_36438000_36496141	0/0	t0002	4129	91	19	6	53	2	11	copy fasta	KCTD20	chr6	36438000	36496141
KCTD20_chr6_36438000_36496141	0/0	t0003	4125	41	1	15	24	0	1	copy fasta	KCTD20	chr6	36438000	36496141
KCTD20_chr6_36438000_36496141	0/0	t0004	4130	17	1	9	2	2	3	copy fasta	KCTD20	chr6	36438000	36496141
KCTD20_chr6_36438000_36496141	0/0	t0005	4125	12	1	6	1	2	2	copy fasta	KCTD20	chr6	36438000	36496141
KCTD20_chr6_36438000_36496141	0/0	t0006	4125	12	10	1	0	1	0	copy fasta	KCTD20	chr6	36438000	36496141
KCTD20_chr6_36438000_36496141	0/0	t0007	4124	9	8	1	0	0	0	copy fasta	KCTD20	chr6	36438000	36496141
KCTD20_chr6_36438000_36496141	0/0	t0008	4125	6	0	3	3	0	0	copy fasta	KCTD20	chr6	36438000	36496141
KCTD20_chr6_36438000_36496141	0/0	t0009	4129	6	6	0	0	0	0	copy fasta	KCTD20	chr6	36438000	36496141
KCTD20_chr6_36438000_36496141	0/0	t0010	4125	4	4	0	0	0	0	copy fasta	KCTD20	chr6	36438000	36496141
KCTD20_chr6_36438000_36496141	0/0	t0011	4125	4	4	0	0	0	0	copy fasta	KCTD20	chr6	36438000	36496141
KCTD20_chr6_36438000_36496141	0/0	t0012	4125	3	3	0	0	0	0	copy fasta	KCTD20	chr6	36438000	36496141
KCTD20_chr6_36438000_36496141	0/0	t0013	4125	3	1	1	0	0	1	copy fasta	KCTD20	chr6	36438000	36496141
KCTD20_chr6_36438000_36496141	0/0	t0014	4125	2	0	0	2	0	0	copy fasta	KCTD20	chr6	36438000	36496141
KCTD20_chr6_36438000_36496141	0/0	t0015	4124	2	2	0	0	0	0	copy fasta	KCTD20	chr6	36438000	36496141
KCTD20_chr6_36438000_36496141	0/0	t0016	4129	2	2	0	0	0	0	copy fasta	KCTD20	chr6	36438000	36496141
KCTD20_chr6_36438000_36496141	0/0	t0017	4125	2	0	0	2	0	0	copy fasta	KCTD20	chr6	36438000	36496141
KCTD20_chr6_36438000_36496141	0/0	t0018	4125	2	0	0	0	1	1	copy fasta	KCTD20	chr6	36438000	36496141
KCTD20_chr6_36438000_36496141	0/0	t0019	4125	1	0	0	1	0	0	copy fasta	KCTD20	chr6	36438000	36496141