JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
KCTD20_chr6_36438000_36496141	0/0	t0020	4125	1	0	0	1	0	0	copy fasta	KCTD20	chr6	36438000	36496141
KCTD20_chr6_36438000_36496141	0/0	t0021	4125	1	1	0	0	0	0	copy fasta	KCTD20	chr6	36438000	36496141
KCTD20_chr6_36438000_36496141	0/0	t0022	4088	1	0	0	1	0	0	copy fasta	KCTD20	chr6	36438000	36496141
KCTD20_chr6_36438000_36496141	0/0	t0023	4129	1	0	0	1	0	0	copy fasta	KCTD20	chr6	36438000	36496141
KCTD20_chr6_36438000_36496141	0/0	t0024	4129	1	1	0	0	0	0	copy fasta	KCTD20	chr6	36438000	36496141
KCTD20_chr6_36438000_36496141	0/0	t0025	4129	1	0	0	1	0	0	copy fasta	KCTD20	chr6	36438000	36496141
KCTD20_chr6_36438000_36496141	0/0	t0026	4129	1	1	0	0	0	0	copy fasta	KCTD20	chr6	36438000	36496141
KCTD20_chr6_36438000_36496141	0/0	t0027	4129	1	1	0	0	0	0	copy fasta	KCTD20	chr6	36438000	36496141
KCTD20_chr6_36438000_36496141	0/0	t0028	4125	1	1	0	0	0	0	copy fasta	KCTD20	chr6	36438000	36496141
KCTD20_chr6_36438000_36496141	0/0	t0029	4125	1	0	1	0	0	0	copy fasta	KCTD20	chr6	36438000	36496141
KCTD20_chr6_36438000_36496141	0/0	t0030	4124	1	1	0	0	0	0	copy fasta	KCTD20	chr6	36438000	36496141
KCTD20_chr6_36438000_36496141	0/0	t0031	4125	1	0	0	1	0	0	copy fasta	KCTD20	chr6	36438000	36496141
KCTD20_chr6_36438000_36496141	0/0	t0032	4125	1	0	0	0	0	1	copy fasta	KCTD20	chr6	36438000	36496141
KCTD20_chr6_36438000_36496141	0/0	t0033	4125	1	0	0	1	0	0	copy fasta	KCTD20	chr6	36438000	36496141
KCTD20_chr6_36438000_36496141	0/0	t0034	4129	1	1	0	0	0	0	copy fasta	KCTD20	chr6	36438000	36496141
KCTD20_chr6_36438000_36496141	0/0	t0035	4125	1	0	0	0	0	1	copy fasta	KCTD20	chr6	36438000	36496141
KCTD20_chr6_36438000_36496141	0/0	t0036	4125	1	0	0	0	1	0	copy fasta	KCTD20	chr6	36438000	36496141
KCTD20_chr6_36438000_36496141	0/0	t0037	4129	1	1	0	0	0	0	copy fasta	KCTD20	chr6	36438000	36496141
KCTD20_chr6_36438000_36496141	0/0	t0038	4125	1	0	0	1	0	0	copy fasta	KCTD20	chr6	36438000	36496141
KCTD21_chr11_78166249_78193626	0/1	t0001	2607	84	7	21	48	4	3	copy fasta	KCTD21	chr11	78166249	78193626
KCTD21_chr11_78166249_78193626	1/0	t0002	2607	66	3	16	30	0	16	copy fasta	KCTD21	chr11	78166249	78193626
KCTD21_chr11_78166249_78193626	0/0	t0003	2607	34	1	13	13	5	2	copy fasta	KCTD21	chr11	78166249	78193626
KCTD21_chr11_78166249_78193626	0/0	t0004	2607	26	2	1	20	0	3	copy fasta	KCTD21	chr11	78166249	78193626
KCTD21_chr11_78166249_78193626	0/0	t0005	2607	24	0	2	20	0	2	copy fasta	KCTD21	chr11	78166249	78193626
KCTD21_chr11_78166249_78193626	0/0	t0006	2607	22	0	0	22	0	0	copy fasta	KCTD21	chr11	78166249	78193626
KCTD21_chr11_78166249_78193626	0/0	t0007	2607	16	7	0	5	0	4	copy fasta	KCTD21	chr11	78166249	78193626
KCTD21_chr11_78166249_78193626	0/0	t0008	2607	12	12	0	0	0	0	copy fasta	KCTD21	chr11	78166249	78193626
KCTD21_chr11_78166249_78193626	0/0	t0009	2607	11	0	2	8	1	0	copy fasta	KCTD21	chr11	78166249	78193626
KCTD21_chr11_78166249_78193626	0/0	t0010	2607	10	0	4	5	1	0	copy fasta	KCTD21	chr11	78166249	78193626
KCTD21_chr11_78166249_78193626	0/0	t0011	2607	9	7	1	0	1	0	copy fasta	KCTD21	chr11	78166249	78193626
KCTD21_chr11_78166249_78193626	0/0	t0012	2607	9	9	0	0	0	0	copy fasta	KCTD21	chr11	78166249	78193626
KCTD21_chr11_78166249_78193626	0/0	t0013	2607	9	0	1	3	0	5	copy fasta	KCTD21	chr11	78166249	78193626
KCTD21_chr11_78166249_78193626	0/0	t0014	2607	8	0	6	0	0	2	copy fasta	KCTD21	chr11	78166249	78193626
KCTD21_chr11_78166249_78193626	0/0	t0015	2607	6	5	1	0	0	0	copy fasta	KCTD21	chr11	78166249	78193626
KCTD21_chr11_78166249_78193626	0/0	t0016	2607	6	6	0	0	0	0	copy fasta	KCTD21	chr11	78166249	78193626
KCTD21_chr11_78166249_78193626	0/0	t0017	2607	5	5	0	0	0	0	copy fasta	KCTD21	chr11	78166249	78193626
KCTD21_chr11_78166249_78193626	0/0	t0018	2607	5	0	4	1	0	0	copy fasta	KCTD21	chr11	78166249	78193626
KCTD21_chr11_78166249_78193626	0/0	t0019	2607	5	3	1	1	0	0	copy fasta	KCTD21	chr11	78166249	78193626
KCTD21_chr11_78166249_78193626	0/0	t0020	2607	4	2	1	1	0	0	copy fasta	KCTD21	chr11	78166249	78193626
KCTD21_chr11_78166249_78193626	0/0	t0021	2607	3	0	0	3	0	0	copy fasta	KCTD21	chr11	78166249	78193626
KCTD21_chr11_78166249_78193626	0/0	t0022	2607	3	3	0	0	0	0	copy fasta	KCTD21	chr11	78166249	78193626
KCTD21_chr11_78166249_78193626	0/0	t0023	2607	3	0	0	0	2	1	copy fasta	KCTD21	chr11	78166249	78193626
KCTD21_chr11_78166249_78193626	0/0	t0024	2607	3	0	0	3	0	0	copy fasta	KCTD21	chr11	78166249	78193626
KCTD21_chr11_78166249_78193626	0/0	t0025	2607	3	0	0	3	0	0	copy fasta	KCTD21	chr11	78166249	78193626
KCTD21_chr11_78166249_78193626	0/0	t0026	2607	3	2	1	0	0	0	copy fasta	KCTD21	chr11	78166249	78193626
KCTD21_chr11_78166249_78193626	0/0	t0027	2607	2	2	0	0	0	0	copy fasta	KCTD21	chr11	78166249	78193626
KCTD21_chr11_78166249_78193626	0/0	t0028	2607	2	2	0	0	0	0	copy fasta	KCTD21	chr11	78166249	78193626
KCTD21_chr11_78166249_78193626	0/0	t0029	2607	2	2	0	0	0	0	copy fasta	KCTD21	chr11	78166249	78193626
KCTD21_chr11_78166249_78193626	0/0	t0030	2607	2	0	0	2	0	0	copy fasta	KCTD21	chr11	78166249	78193626
KCTD21_chr11_78166249_78193626	0/0	t0031	2607	2	2	0	0	0	0	copy fasta	KCTD21	chr11	78166249	78193626