Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ANXA4_chr2_69737134_69832112	0/0	t0012	1687	1	0	0	0	0	1	copy fasta	ANXA4	chr2	69737134	69832112
ANXA4_chr2_69737134_69832112	0/0	t0013	1681	1	1	0	0	0	0	copy fasta	ANXA4	chr2	69737134	69832112
ANXA4_chr2_69737134_69832112	0/0	t0014	1687	1	0	0	1	0	0	copy fasta	ANXA4	chr2	69737134	69832112
ANXA4_chr2_69737134_69832112	0/0	t0015	1685	1	0	1	0	0	0	copy fasta	ANXA4	chr2	69737134	69832112
ANXA4_chr2_69737134_69832112	0/0	t0016	1684	1	0	0	1	0	0	copy fasta	ANXA4	chr2	69737134	69832112
ANXA4_chr2_69737134_69832112	0/0	t0017	1687	1	0	0	1	0	0	copy fasta	ANXA4	chr2	69737134	69832112
ANXA4_chr2_69737134_69832112	0/0	t0018	1686	1	1	0	0	0	0	copy fasta	ANXA4	chr2	69737134	69832112
ANXA4_chr2_69737134_69832112	0/0	t0019	1686	1	0	0	0	1	0	copy fasta	ANXA4	chr2	69737134	69832112
ANXA4_chr2_69737134_69832112	0/0	t0020	1687	1	0	0	1	0	0	copy fasta	ANXA4	chr2	69737134	69832112
ANXA4_chr2_69737134_69832112	0/0	t0021	1685	1	0	1	0	0	0	copy fasta	ANXA4	chr2	69737134	69832112
ANXA5_chr4_121662946_121701980	1/1	t0001	676	158	20	32	81	5	18	copy fasta	ANXA5	chr4	121662946	121701980
ANXA5_chr4_121662946_121701980	0/0	t0002	676	71	6	26	20	9	10	copy fasta	ANXA5	chr4	121662946	121701980
ANXA5_chr4_121662946_121701980	0/0	t0003	676	44	12	6	21	0	5	copy fasta	ANXA5	chr4	121662946	121701980
ANXA5_chr4_121662946_121701980	0/0	t0004	676	23	22	1	0	0	0	copy fasta	ANXA5	chr4	121662946	121701980
ANXA5_chr4_121662946_121701980	0/0	t0005	676	15	12	2	0	0	1	copy fasta	ANXA5	chr4	121662946	121701980
ANXA5_chr4_121662946_121701980	0/0	t0006	676	11	10	1	0	0	0	copy fasta	ANXA5	chr4	121662946	121701980
ANXA5_chr4_121662946_121701980	0/0	t0007	676	6	0	0	6	0	0	copy fasta	ANXA5	chr4	121662946	121701980
ANXA5_chr4_121662946_121701980	0/0	t0008	676	6	6	0	0	0	0	copy fasta	ANXA5	chr4	121662946	121701980
ANXA5_chr4_121662946_121701980	0/0	t0009	676	1	1	0	0	0	0	copy fasta	ANXA5	chr4	121662946	121701980
ANXA5_chr4_121662946_121701980	0/0	t0010	676	1	1	0	0	0	0	copy fasta	ANXA5	chr4	121662946	121701980
ANXA5_chr4_121662946_121701980	0/0	t0011	676	1	1	0	0	0	0	copy fasta	ANXA5	chr4	121662946	121701980
ANXA5_chr4_121662946_121701980	0/0	t0012	676	1	1	0	0	0	0	copy fasta	ANXA5	chr4	121662946	121701980
ANXA6_chr5_151095706_151162779	1/1	t0001	868	266	75	43	101	10	35	copy fasta	ANXA6	chr5	151095706	151162779
ANXA6_chr5_151095706_151162779	0/0	t0002	868	113	9	25	59	8	12	copy fasta	ANXA6	chr5	151095706	151162779
ANXA6_chr5_151095706_151162779	0/0	t0003	868	14	3	2	8	0	1	copy fasta	ANXA6	chr5	151095706	151162779
ANXA6_chr5_151095706_151162779	0/0	t0004	869	4	4	0	0	0	0	copy fasta	ANXA6	chr5	151095706	151162779
ANXA6_chr5_151095706_151162779	0/0	t0005	868	3	3	0	0	0	0	copy fasta	ANXA6	chr5	151095706	151162779
ANXA6_chr5_151095706_151162779	0/0	t0006	868	2	2	0	0	0	0	copy fasta	ANXA6	chr5	151095706	151162779
ANXA6_chr5_151095706_151162779	0/0	t0007	868	1	0	1	0	0	0	copy fasta	ANXA6	chr5	151095706	151162779
ANXA6_chr5_151095706_151162779	0/0	t0008	868	1	0	0	1	0	0	copy fasta	ANXA6	chr5	151095706	151162779
ANXA6_chr5_151095706_151162779	0/0	t0009	868	1	1	0	0	0	0	copy fasta	ANXA6	chr5	151095706	151162779
ANXA6_chr5_151095706_151162779	0/0	t0010	868	1	0	1	0	0	0	copy fasta	ANXA6	chr5	151095706	151162779
ANXA6_chr5_151095706_151162779	0/0	t0011	869	1	1	0	0	0	0	copy fasta	ANXA6	chr5	151095706	151162779
ANXA6_chr5_151095706_151162779	0/0	t0012	868	1	0	0	1	0	0	copy fasta	ANXA6	chr5	151095706	151162779
ANXA7_chr10_73370101_73419058	0/1	t0001	1042	162	43	28	65	5	20	copy fasta	ANXA7	chr10	73370101	73419058
ANXA7_chr10_73370101_73419058	0/0	t0002	1043	81	11	7	51	0	12	copy fasta	ANXA7	chr10	73370101	73419058
ANXA7_chr10_73370101_73419058	0/0	t0003	1043	14	12	2	0	0	0	copy fasta	ANXA7	chr10	73370101	73419058
ANXA7_chr10_73370101_73419058	1/0	t0004	1042	3	0	1	0	1	0	copy fasta	ANXA7	chr10	73370101	73419058
ANXA7_chr10_73370101_73419058	0/0	t0005	1043	1	1	0	0	0	0	copy fasta	ANXA7	chr10	73370101	73419058
ANXA7_chr10_73370101_73419058	0/0	t0006	1043	1	1	0	0	0	0	copy fasta	ANXA7	chr10	73370101	73419058
ANXA7_chr10_73370101_73419058	0/0	t0007	1043	1	1	0	0	0	0	copy fasta	ANXA7	chr10	73370101	73419058
ANXA7_chr10_73370101_73419058	0/0	t0008	1043	1	1	0	0	0	0	copy fasta	ANXA7	chr10	73370101	73419058
ANXA8L1_chr10_46370776_46396778	1/1	t0001	925	257	24	42	150	11	28	copy fasta	ANXA8L1	chr10	46370776	46396778
ANXA8L1_chr10_46370776_46396778	0/0	t0002	925	46	4	18	18	1	5	copy fasta	ANXA8L1	chr10	46370776	46396778
ANXA8L1_chr10_46370776_46396778	0/0	t0003	925	30	8	7	8	1	6	copy fasta	ANXA8L1	chr10	46370776	46396778
ANXA8L1_chr10_46370776_46396778	0/0	t0004	925	20	18	2	0	0	0	copy fasta	ANXA8L1	chr10	46370776	46396778
ANXA8L1_chr10_46370776_46396778	0/0	t0005	925	14	12	2	0	0	0	copy fasta	ANXA8L1	chr10	46370776	46396778
ANXA8L1_chr10_46370776_46396778	0/0	t0006	926	6	0	0	6	0	0	copy fasta	ANXA8L1	chr10	46370776	46396778
ANXA8L1_chr10_46370776_46396778	0/0	t0007	925	5	5	0	0	0	0	copy fasta	ANXA8L1	chr10	46370776	46396778
ANXA8L1_chr10_46370776_46396778	0/0	t0008	925	2	1	1	0	0	0	copy fasta	ANXA8L1	chr10	46370776	46396778