JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
KCTD21_chr11_78166249_78193626	0/0	t0032	2607	2	0	0	0	2	0	copy fasta	KCTD21	chr11	78166249	78193626
KCTD21_chr11_78166249_78193626	0/0	t0033	2607	2	1	0	0	0	1	copy fasta	KCTD21	chr11	78166249	78193626
KCTD21_chr11_78166249_78193626	0/0	t0034	2607	1	0	0	0	0	1	copy fasta	KCTD21	chr11	78166249	78193626
KCTD21_chr11_78166249_78193626	0/0	t0035	2607	1	0	0	0	0	1	copy fasta	KCTD21	chr11	78166249	78193626
KCTD21_chr11_78166249_78193626	0/0	t0036	2607	1	0	0	1	0	0	copy fasta	KCTD21	chr11	78166249	78193626
KCTD21_chr11_78166249_78193626	0/0	t0037	2607	1	0	0	0	0	1	copy fasta	KCTD21	chr11	78166249	78193626
KCTD21_chr11_78166249_78193626	0/0	t0038	2607	1	1	0	0	0	0	copy fasta	KCTD21	chr11	78166249	78193626
KCTD21_chr11_78166249_78193626	0/0	t0039	2607	1	0	0	1	0	0	copy fasta	KCTD21	chr11	78166249	78193626
KCTD21_chr11_78166249_78193626	0/0	t0040	2607	1	0	0	1	0	0	copy fasta	KCTD21	chr11	78166249	78193626
KCTD21_chr11_78166249_78193626	0/0	t0041	2607	1	0	0	1	0	0	copy fasta	KCTD21	chr11	78166249	78193626
KCTD21_chr11_78166249_78193626	0/0	t0042	2607	1	1	0	0	0	0	copy fasta	KCTD21	chr11	78166249	78193626
KCTD21_chr11_78166249_78193626	0/0	t0043	2607	1	1	0	0	0	0	copy fasta	KCTD21	chr11	78166249	78193626
KCTD21_chr11_78166249_78193626	0/0	t0044	2607	1	0	0	0	0	1	copy fasta	KCTD21	chr11	78166249	78193626
KCTD21_chr11_78166249_78193626	0/0	t0045	2607	1	1	0	0	0	0	copy fasta	KCTD21	chr11	78166249	78193626
KCTD21_chr11_78166249_78193626	0/0	t0046	2607	1	0	0	0	0	1	copy fasta	KCTD21	chr11	78166249	78193626
KCTD21_chr11_78166249_78193626	0/0	t0047	2607	1	0	0	1	0	0	copy fasta	KCTD21	chr11	78166249	78193626
KCTD21_chr11_78166249_78193626	0/0	t0048	2607	1	0	0	1	0	0	copy fasta	KCTD21	chr11	78166249	78193626
KCTD21_chr11_78166249_78193626	0/0	t0049	2607	1	1	0	0	0	0	copy fasta	KCTD21	chr11	78166249	78193626
KCTD21_chr11_78166249_78193626	0/0	t0050	2607	1	0	0	1	0	0	copy fasta	KCTD21	chr11	78166249	78193626
KCTD21_chr11_78166249_78193626	0/0	t0051	2607	1	0	1	0	0	0	copy fasta	KCTD21	chr11	78166249	78193626
KCTD21_chr11_78166249_78193626	0/0	t0052	2607	1	1	0	0	0	0	copy fasta	KCTD21	chr11	78166249	78193626
KCTD21_chr11_78166249_78193626	0/0	t0053	2607	1	0	0	1	0	0	copy fasta	KCTD21	chr11	78166249	78193626
KCTD21_chr11_78166249_78193626	0/0	t0054	2607	1	0	1	0	0	0	copy fasta	KCTD21	chr11	78166249	78193626
KCTD21_chr11_78166249_78193626	0/0	t0055	2607	1	1	0	0	0	0	copy fasta	KCTD21	chr11	78166249	78193626
KCTD21_chr11_78166249_78193626	0/0	t0056	2607	1	0	1	0	0	0	copy fasta	KCTD21	chr11	78166249	78193626
KCTD21_chr11_78166249_78193626	0/0	t0057	2607	1	1	0	0	0	0	copy fasta	KCTD21	chr11	78166249	78193626
KCTD21_chr11_78166249_78193626	0/0	t0058	2607	1	1	0	0	0	0	copy fasta	KCTD21	chr11	78166249	78193626
KCTD21_chr11_78166249_78193626	0/0	t0059	2607	1	1	0	0	0	0	copy fasta	KCTD21	chr11	78166249	78193626
KCTD21_chr11_78166249_78193626	0/0	t0060	2607	1	1	0	0	0	0	copy fasta	KCTD21	chr11	78166249	78193626
KCTD2_chr17_75042225_75070886	1/0	t0001	2866	115	22	26	41	7	18	copy fasta	KCTD2	chr17	75042225	75070886
KCTD2_chr17_75042225_75070886	0/0	t0002	2866	70	5	29	22	3	11	copy fasta	KCTD2	chr17	75042225	75070886
KCTD2_chr17_75042225_75070886	0/0	t0003	2870	69	5	1	58	0	5	copy fasta	KCTD2	chr17	75042225	75070886
KCTD2_chr17_75042225_75070886	0/0	t0004	2866	28	25	3	0	0	0	copy fasta	KCTD2	chr17	75042225	75070886
KCTD2_chr17_75042225_75070886	0/0	t0005	2866	26	0	2	19	2	3	copy fasta	KCTD2	chr17	75042225	75070886
KCTD2_chr17_75042225_75070886	0/0	t0006	2866	17	15	2	0	0	0	copy fasta	KCTD2	chr17	75042225	75070886
KCTD2_chr17_75042225_75070886	0/1	t0007	2866	15	7	2	0	2	3	copy fasta	KCTD2	chr17	75042225	75070886
KCTD2_chr17_75042225_75070886	0/0	t0008	2871	8	0	0	8	0	0	copy fasta	KCTD2	chr17	75042225	75070886
KCTD2_chr17_75042225_75070886	0/0	t0009	2868	5	1	3	1	0	0	copy fasta	KCTD2	chr17	75042225	75070886
KCTD2_chr17_75042225_75070886	0/0	t0010	2870	5	5	0	0	0	0	copy fasta	KCTD2	chr17	75042225	75070886
KCTD2_chr17_75042225_75070886	0/0	t0011	2870	5	0	0	5	0	0	copy fasta	KCTD2	chr17	75042225	75070886
KCTD2_chr17_75042225_75070886	0/0	t0012	2866	4	0	0	2	0	2	copy fasta	KCTD2	chr17	75042225	75070886
KCTD2_chr17_75042225_75070886	0/0	t0013	2869	4	4	0	0	0	0	copy fasta	KCTD2	chr17	75042225	75070886
KCTD2_chr17_75042225_75070886	0/0	t0014	2866	3	0	2	0	1	0	copy fasta	KCTD2	chr17	75042225	75070886
KCTD2_chr17_75042225_75070886	0/0	t0015	2870	3	0	0	3	0	0	copy fasta	KCTD2	chr17	75042225	75070886
KCTD2_chr17_75042225_75070886	0/0	t0016	2870	2	1	1	0	0	0	copy fasta	KCTD2	chr17	75042225	75070886
KCTD2_chr17_75042225_75070886	0/0	t0017	2854	2	0	0	2	0	0	copy fasta	KCTD2	chr17	75042225	75070886
KCTD2_chr17_75042225_75070886	0/0	t0018	2870	2	1	0	1	0	0	copy fasta	KCTD2	chr17	75042225	75070886
KCTD2_chr17_75042225_75070886	0/0	t0019	2866	2	0	1	1	0	0	copy fasta	KCTD2	chr17	75042225	75070886
KCTD2_chr17_75042225_75070886	0/0	t0020	2870	1	0	0	0	0	1	copy fasta	KCTD2	chr17	75042225	75070886
KCTD2_chr17_75042225_75070886	0/0	t0021	2870	1	0	0	1	0	0	copy fasta	KCTD2	chr17	75042225	75070886