JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
KCTD2_chr17_75042225_75070886	0/0	t0022	2866	1	1	0	0	0	0	copy fasta	KCTD2	chr17	75042225	75070886
KCTD2_chr17_75042225_75070886	0/0	t0023	2866	1	0	1	0	0	0	copy fasta	KCTD2	chr17	75042225	75070886
KCTD2_chr17_75042225_75070886	0/0	t0024	2866	1	1	0	0	0	0	copy fasta	KCTD2	chr17	75042225	75070886
KCTD2_chr17_75042225_75070886	0/0	t0025	2866	1	0	0	0	1	0	copy fasta	KCTD2	chr17	75042225	75070886
KCTD2_chr17_75042225_75070886	0/0	t0026	2868	1	0	0	1	0	0	copy fasta	KCTD2	chr17	75042225	75070886
KCTD2_chr17_75042225_75070886	0/0	t0027	2868	1	0	1	0	0	0	copy fasta	KCTD2	chr17	75042225	75070886
KCTD2_chr17_75042225_75070886	0/0	t0028	2870	1	0	0	1	0	0	copy fasta	KCTD2	chr17	75042225	75070886
KCTD2_chr17_75042225_75070886	0/0	t0029	2870	1	1	0	0	0	0	copy fasta	KCTD2	chr17	75042225	75070886
KCTD2_chr17_75042225_75070886	0/0	t0030	2870	1	1	0	0	0	0	copy fasta	KCTD2	chr17	75042225	75070886
KCTD2_chr17_75042225_75070886	0/0	t0031	2870	1	1	0	0	0	0	copy fasta	KCTD2	chr17	75042225	75070886
KCTD2_chr17_75042225_75070886	0/0	t0032	2292	1	1	0	0	0	0	copy fasta	KCTD2	chr17	75042225	75070886
KCTD2_chr17_75042225_75070886	0/0	t0033	2870	1	0	0	1	0	0	copy fasta	KCTD2	chr17	75042225	75070886
KCTD2_chr17_75042225_75070886	0/0	t0034	2866	1	0	0	0	0	1	copy fasta	KCTD2	chr17	75042225	75070886
KCTD2_chr17_75042225_75070886	0/0	t0035	2866	1	0	0	0	1	0	copy fasta	KCTD2	chr17	75042225	75070886
KCTD2_chr17_75042225_75070886	0/0	t0036	2866	1	1	0	0	0	0	copy fasta	KCTD2	chr17	75042225	75070886
KCTD2_chr17_75042225_75070886	0/0	t0037	2870	1	0	0	1	0	0	copy fasta	KCTD2	chr17	75042225	75070886
KCTD2_chr17_75042225_75070886	0/0	t0038	2866	1	0	0	0	0	1	copy fasta	KCTD2	chr17	75042225	75070886
KCTD2_chr17_75042225_75070886	0/0	t0039	2866	1	0	0	0	1	0	copy fasta	KCTD2	chr17	75042225	75070886
KCTD2_chr17_75042225_75070886	0/0	t0040	2866	1	0	1	0	0	0	copy fasta	KCTD2	chr17	75042225	75070886
KCTD2_chr17_75042225_75070886	0/0	t0041	2866	1	0	0	0	0	1	copy fasta	KCTD2	chr17	75042225	75070886
KCTD2_chr17_75042225_75070886	0/0	t0042	2870	1	0	1	0	0	0	copy fasta	KCTD2	chr17	75042225	75070886
KCTD3_chr1_215562304_215626807	1/1	t0001	1572	269	68	56	114	8	21	copy fasta	KCTD3	chr1	215562304	215626807
KCTD3_chr1_215562304_215626807	0/0	t0002	1572	21	0	0	16	0	5	copy fasta	KCTD3	chr1	215562304	215626807
KCTD3_chr1_215562304_215626807	0/0	t0003	1572	6	0	0	6	0	0	copy fasta	KCTD3	chr1	215562304	215626807
KCTD3_chr1_215562304_215626807	0/0	t0004	1572	4	4	0	0	0	0	copy fasta	KCTD3	chr1	215562304	215626807
KCTD3_chr1_215562304_215626807	0/0	t0005	1572	4	4	0	0	0	0	copy fasta	KCTD3	chr1	215562304	215626807
KCTD3_chr1_215562304_215626807	0/0	t0006	1572	2	0	0	2	0	0	copy fasta	KCTD3	chr1	215562304	215626807
KCTD3_chr1_215562304_215626807	0/0	t0007	1572	2	0	0	0	0	2	copy fasta	KCTD3	chr1	215562304	215626807
KCTD3_chr1_215562304_215626807	0/0	t0008	1572	1	0	0	0	0	1	copy fasta	KCTD3	chr1	215562304	215626807
KCTD3_chr1_215562304_215626807	0/0	t0009	1572	1	0	0	1	0	0	copy fasta	KCTD3	chr1	215562304	215626807
KCTD3_chr1_215562304_215626807	0/0	t0010	1572	1	0	0	1	0	0	copy fasta	KCTD3	chr1	215562304	215626807
KCTD3_chr1_215562304_215626807	0/0	t0011	1572	1	0	0	1	0	0	copy fasta	KCTD3	chr1	215562304	215626807
KCTD3_chr1_215562304_215626807	0/0	t0012	1572	1	0	0	1	0	0	copy fasta	KCTD3	chr1	215562304	215626807
KCTD3_chr1_215562304_215626807	0/0	t0013	1572	1	0	0	0	0	1	copy fasta	KCTD3	chr1	215562304	215626807
KCTD4_chr13_45187853_45206045	1/1	t0001	1345	290	60	45	143	10	30	copy fasta	KCTD4	chr13	45187853	45206045
KCTD4_chr13_45187853_45206045	0/0	t0002	1345	52	24	11	11	2	4	copy fasta	KCTD4	chr13	45187853	45206045
KCTD4_chr13_45187853_45206045	0/0	t0003	1345	4	3	1	0	0	0	copy fasta	KCTD4	chr13	45187853	45206045
KCTD4_chr13_45187853_45206045	0/0	t0004	1345	3	1	2	0	0	0	copy fasta	KCTD4	chr13	45187853	45206045
KCTD4_chr13_45187853_45206045	0/0	t0005	1345	1	1	0	0	0	0	copy fasta	KCTD4	chr13	45187853	45206045
KCTD4_chr13_45187853_45206045	0/0	t0006	1345	1	1	0	0	0	0	copy fasta	KCTD4	chr13	45187853	45206045
KCTD4_chr13_45187853_45206045	0/0	t0007	1345	1	0	1	0	0	0	copy fasta	KCTD4	chr13	45187853	45206045
KCTD5_chr16_2677523_2714030	1/1	t0001	1730	356	64	70	155	16	49	copy fasta	KCTD5	chr16	2677523	2714030
KCTD5_chr16_2677523_2714030	0/0	t0002	1730	13	11	2	0	0	0	copy fasta	KCTD5	chr16	2677523	2714030
KCTD5_chr16_2677523_2714030	0/0	t0003	1730	9	8	1	0	0	0	copy fasta	KCTD5	chr16	2677523	2714030
KCTD5_chr16_2677523_2714030	0/0	t0004	1730	6	0	4	2	0	0	copy fasta	KCTD5	chr16	2677523	2714030
KCTD5_chr16_2677523_2714030	0/0	t0005	1730	3	3	0	0	0	0	copy fasta	KCTD5	chr16	2677523	2714030
KCTD5_chr16_2677523_2714030	0/0	t0006	1730	3	3	0	0	0	0	copy fasta	KCTD5	chr16	2677523	2714030
KCTD5_chr16_2677523_2714030	0/0	t0007	1727	3	0	0	3	0	0	copy fasta	KCTD5	chr16	2677523	2714030
KCTD5_chr16_2677523_2714030	0/0	t0008	1730	3	0	2	0	1	0	copy fasta	KCTD5	chr16	2677523	2714030
KCTD5_chr16_2677523_2714030	0/0	t0009	1730	2	2	0	0	0	0	copy fasta	KCTD5	chr16	2677523	2714030