JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
KCTD5_chr16_2677523_2714030	0/0	t0010	1730	2	2	0	0	0	0	copy fasta	KCTD5	chr16	2677523	2714030
KCTD5_chr16_2677523_2714030	0/0	t0011	1730	2	2	0	0	0	0	copy fasta	KCTD5	chr16	2677523	2714030
KCTD5_chr16_2677523_2714030	0/0	t0012	1730	1	1	0	0	0	0	copy fasta	KCTD5	chr16	2677523	2714030
KCTD5_chr16_2677523_2714030	0/0	t0013	1730	1	0	1	0	0	0	copy fasta	KCTD5	chr16	2677523	2714030
KCTD5_chr16_2677523_2714030	0/0	t0014	1730	1	0	0	1	0	0	copy fasta	KCTD5	chr16	2677523	2714030
KCTD5_chr16_2677523_2714030	0/0	t0015	1730	1	1	0	0	0	0	copy fasta	KCTD5	chr16	2677523	2714030
KCTD5_chr16_2677523_2714030	0/0	t0016	1730	1	0	0	0	0	1	copy fasta	KCTD5	chr16	2677523	2714030
KCTD5_chr16_2677523_2714030	0/0	t0017	1730	1	1	0	0	0	0	copy fasta	KCTD5	chr16	2677523	2714030
KCTD5_chr16_2677523_2714030	0/0	t0018	1730	1	0	0	1	0	0	copy fasta	KCTD5	chr16	2677523	2714030
KCTD5_chr16_2677523_2714030	0/0	t0019	1730	1	1	0	0	0	0	copy fasta	KCTD5	chr16	2677523	2714030
KCTD5_chr16_2677523_2714030	0/0	t0020	1730	1	0	0	1	0	0	copy fasta	KCTD5	chr16	2677523	2714030
KCTD5_chr16_2677523_2714030	0/0	t0021	1730	1	0	0	1	0	0	copy fasta	KCTD5	chr16	2677523	2714030
KCTD5_chr16_2677523_2714030	0/0	t0022	1730	1	0	0	0	1	0	copy fasta	KCTD5	chr16	2677523	2714030
KCTD5_chr16_2677523_2714030	0/0	t0023	1730	1	1	0	0	0	0	copy fasta	KCTD5	chr16	2677523	2714030
KCTD6_chr3_58487096_58507356	1/0	t0001	842	340	71	56	169	10	33	copy fasta	KCTD6	chr3	58487096	58507356
KCTD6_chr3_58487096_58507356	0/1	t0002	843	54	24	16	1	2	10	copy fasta	KCTD6	chr3	58487096	58507356
KCTD6_chr3_58487096_58507356	0/0	t0003	842	5	0	0	5	0	0	copy fasta	KCTD6	chr3	58487096	58507356
KCTD6_chr3_58487096_58507356	0/0	t0004	842	2	2	0	0	0	0	copy fasta	KCTD6	chr3	58487096	58507356
KCTD6_chr3_58487096_58507356	0/0	t0005	842	1	0	0	0	0	1	copy fasta	KCTD6	chr3	58487096	58507356
KCTD6_chr3_58487096_58507356	0/0	t0006	842	1	1	0	0	0	0	copy fasta	KCTD6	chr3	58487096	58507356
KCTD6_chr3_58487096_58507356	0/0	t0007	842	1	0	0	1	0	0	copy fasta	KCTD6	chr3	58487096	58507356
KCTD7_chr7_66623881_66648047	1/1	t0001	4000	102	23	15	42	7	13	copy fasta	KCTD7	chr7	66623881	66648047
KCTD7_chr7_66623881_66648047	0/0	t0002	4000	90	28	29	16	5	12	copy fasta	KCTD7	chr7	66623881	66648047
KCTD7_chr7_66623881_66648047	0/0	t0003	4000	69	1	7	57	1	3	copy fasta	KCTD7	chr7	66623881	66648047
KCTD7_chr7_66623881_66648047	0/0	t0004	4000	59	2	9	36	0	12	copy fasta	KCTD7	chr7	66623881	66648047
KCTD7_chr7_66623881_66648047	0/0	t0005	4000	26	0	5	19	2	0	copy fasta	KCTD7	chr7	66623881	66648047
KCTD7_chr7_66623881_66648047	0/0	t0006	4000	17	17	0	0	0	0	copy fasta	KCTD7	chr7	66623881	66648047
KCTD7_chr7_66623881_66648047	0/0	t0007	4000	17	0	0	17	0	0	copy fasta	KCTD7	chr7	66623881	66648047
KCTD7_chr7_66623881_66648047	0/0	t0008	4000	8	0	0	8	0	0	copy fasta	KCTD7	chr7	66623881	66648047
KCTD7_chr7_66623881_66648047	0/0	t0009	4000	5	0	4	0	1	0	copy fasta	KCTD7	chr7	66623881	66648047
KCTD7_chr7_66623881_66648047	0/0	t0010	4000	5	0	5	0	0	0	copy fasta	KCTD7	chr7	66623881	66648047
KCTD7_chr7_66623881_66648047	0/0	t0011	4000	5	4	0	0	0	1	copy fasta	KCTD7	chr7	66623881	66648047
KCTD7_chr7_66623881_66648047	0/0	t0012	3999	5	0	0	5	0	0	copy fasta	KCTD7	chr7	66623881	66648047
KCTD7_chr7_66623881_66648047	0/0	t0013	4000	2	2	0	0	0	0	copy fasta	KCTD7	chr7	66623881	66648047
KCTD7_chr7_66623881_66648047	0/0	t0014	4000	2	0	2	0	0	0	copy fasta	KCTD7	chr7	66623881	66648047
KCTD7_chr7_66623881_66648047	0/0	t0015	4000	2	0	0	2	0	0	copy fasta	KCTD7	chr7	66623881	66648047
KCTD7_chr7_66623881_66648047	0/0	t0016	4000	2	0	2	0	0	0	copy fasta	KCTD7	chr7	66623881	66648047
KCTD7_chr7_66623881_66648047	0/0	t0017	4000	2	2	0	0	0	0	copy fasta	KCTD7	chr7	66623881	66648047
KCTD7_chr7_66623881_66648047	0/0	t0018	4000	1	1	0	0	0	0	copy fasta	KCTD7	chr7	66623881	66648047
KCTD7_chr7_66623881_66648047	0/0	t0019	4000	1	0	0	0	0	1	copy fasta	KCTD7	chr7	66623881	66648047
KCTD7_chr7_66623881_66648047	0/0	t0020	4000	1	0	0	1	0	0	copy fasta	KCTD7	chr7	66623881	66648047
KCTD7_chr7_66623881_66648047	0/0	t0021	4000	1	0	0	1	0	0	copy fasta	KCTD7	chr7	66623881	66648047
KCTD7_chr7_66623881_66648047	0/0	t0022	4000	1	0	0	1	0	0	copy fasta	KCTD7	chr7	66623881	66648047
KCTD7_chr7_66623881_66648047	0/0	t0023	4000	1	1	0	0	0	0	copy fasta	KCTD7	chr7	66623881	66648047
KCTD7_chr7_66623881_66648047	0/0	t0024	4000	1	1	0	0	0	0	copy fasta	KCTD7	chr7	66623881	66648047
KCTD7_chr7_66623881_66648047	0/0	t0025	4000	1	0	0	1	0	0	copy fasta	KCTD7	chr7	66623881	66648047
KCTD7_chr7_66623881_66648047	0/0	t0026	4000	1	1	0	0	0	0	copy fasta	KCTD7	chr7	66623881	66648047
KCTD7_chr7_66623881_66648047	0/0	t0027	4000	1	1	0	0	0	0	copy fasta	KCTD7	chr7	66623881	66648047
KCTD8_chr4_44168903_44453809	0/0	t0001	1174	258	52	50	120	11	25	copy fasta	KCTD8	chr4	44168903	44453809
KCTD8_chr4_44168903_44453809	0/0	t0002	1173	21	20	1	0	0	0	copy fasta	KCTD8	chr4	44168903	44453809